dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002921_00962

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Species

Lineage

Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella;

CAZyme ID

MGYG000002921_00962

CAZy Family

GH28

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
531	MGYG000002921_219\|CGC1	58177.64	4.8619

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002921	1339630	MAG	United States	North America

Gene Location

Start: 235; End: 1830 Strand: -

No EC number prediction in MGYG000002921_00962.

Family	Start	End	Evalue	family coverage
GH28	106	477	6.7e-67	0.916923076923077

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG5434	Pgu1	1.16e-96	82	526	84	529	Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295	Glyco_hydro_28	1.18e-23	188	473	48	304	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218	PLN02218	1.16e-22	73	417	60	363	polygalacturonase ADPG
PLN03003	PLN03003	6.44e-21	174	428	97	318	Probable polygalacturonase At3g15720
PLN03010	PLN03010	3.30e-20	82	449	48	360	polygalacturonase

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATP54717.1	0.0	1	531	1	531
QIA34431.1	0.0	1	531	1	531
QUC03565.1	1.49e-281	1	530	1	529
QOL31033.1	1.65e-237	1	528	1	526
QOL34309.1	3.31e-237	1	528	1	526

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3JUR_A	3.76e-38	65	380	11	335	Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A	1.39e-29	66	380	22	344	Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A	3.18e-26	74	418	150	510	Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P27644	1.19e-58	236	506	23	295	Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3	6.81e-36	85	523	67	481	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922	4.09e-25	43	418	124	503	Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P49063	2.42e-22	81	408	70	353	Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2
Q8RY29	7.16e-22	78	446	65	382	Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000064	0.000000	0.000000	0.000000	0.000000	0.000000

There is no transmembrane helices in MGYG000002921_00962.