CAZyme Information: MGYG000003249_01167

Basic Information

• Species: Victivallis sp900761715
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp900761715
• CAZyme ID: MGYG000003249_01167
• CAZy Family: GH39
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1137		126817.25	5.2744

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003249	2933905	MAG	United States	North America

• Gene Location: Start: 495; End: 3908 Strand: -

Full Sequence      

MKCRGLLTAALALCAWSAWAVEELDLTAPEAKFHIHDAVNREQAVERTVAPDGTPALKAR
WNSDKAGWMEFNANPTLLLPEFTRGTLTLEVFVSDGSRIRGLNGRLTDAEGETFQLPLPV
NELKPGWNTVAVTVDTGRKYNAWGGKSNNKQIDFPVRFSGCSIDFAGKNGSGELYFKKAV
FLTEPEPGKINVVKTERFTSSADWRGEFYEGNGSVDFSPDGALVRLQGKAMALFPRRLEP
VHSGVSAVTIDAELLTGAAEVRFFFSDADGKEFRADWRKLQPGHNEIRFSTTGLLAGAGE
PLIFHGVSLRGTSGTVVRFAEVRLDEVQSKLEAIRVEVRRDCAVNLTEDGNSTLEVENTG
GEPVFLDLHLTFADHLDAVVGELTQALEIAPNTVISLPLPPMAKFGIRYAAGELRDRSAL
DGPGRRIEFRQVRMIPAKPSAERSEGFLFGVCAHPQRYSEAAQRREAETAMLAGAKVLRT
DALWGKIQPNREEWDYSSLDRVVELFGAQGIELELIYSFTPKWAVAADWKPLSPDPARAT
RAPRPDYEYWREFVRRTAGRYQGKIRFFEVWNEPDLFSFANFSAEEYLVMLRIAAKETRA
VNSGAVVLTGGYTCMPPFSALNDQKHQEKILSQAKDSYDVHAFHGHGPFPHYFPQIERMK
VMRENLQVTAPWWANETADNSVFTGEYGQAVTLWKKLFYSWANGSIGYNWYDLRNDGYDP
RNVEHNFGMVTHDFQPKAVYPAYNTITRNFHDARYLDTVTLFPEARLYRFQRAGAMLAAG
WNERPEVQTRLLAFSVEPGAVGEAIDLFDNRSALVNVDGVLFAPFGNTPQALAVTGARLE
PLGELFQVSESPTLSPGGSGKLLLRLTNVFAQPLPVKLALRLPEEVTADYPAELTLAPRE
ERTVSIGLHAGAGYLADQVAIGLRVTLPQGVQAESLIPVQPLLTLRSEEQPAPDFSLADE
RQLQILVPADPSKEHLFWRGVADLSARGWLTAVDRKLKLRLEVTDDRHVQPYRNDEVWKG
DNVQLAFRIPAHRGLWVIGLTRLADGSPQVWVWETPDGVSRESVIPQVQLQTERDDASGK
TYYTAEIPYEAIGAEDGMRFNVLVNDNDGEERESFLQLTPGLGDERKPDRYFILRGL

Enzyme Prediction     

No EC number prediction in MGYG000003249_01167.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	493	746	4.8e-26	0.642691415313225

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	4.11e-53	953	1131	1	183	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
cd09619	CBM9_like_4	1.10e-11	944	1109	7	162	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
cd00241	DOMON_like	1.73e-08	967	1115	1	155	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
pfam01229	Glyco_hydro_39	6.90e-06	543	602	120	188	Glycosyl hydrolases family 39.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AHF94342.1	8.39e-178	55	1123	81	1019
AVM47149.1	2.50e-161	38	1131	186	1301
AHF90198.1	1.68e-153	41	1131	41	1000
AVM46276.1	6.46e-148	57	1131	45	1131
AVM44759.1	5.64e-139	204	1131	33	959

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JVK_A	9.65e-12	450	742	107	407	Structuralinsights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_B Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_C Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000335	0.998822	0.000299	0.000193	0.000168	0.000159

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003249_01167.