logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003358_01706

You are here: Home > Sequence: MGYG000003358_01706

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Kluyvera ascorbata
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kluyvera; Kluyvera ascorbata
CAZyme ID MGYG000003358_01706
CAZy Family PL22
CAZyme Description Oligogalacturonate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
391 MGYG000003358_76|CGC2 44297.59 5.5301
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003358 4968008 MAG United States North America
Gene Location Start: 69986;  End: 71161  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.6

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL22 215 386 8.7e-82 0.6452830188679245
PL22 32 137 4.9e-31 0.3886792452830189

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam14583 Pectate_lyase22 0.0 1 385 1 385
Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
COG0823 TolB 2.32e-32 15 367 72 407
Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].
PRK00178 tolB 4.52e-09 245 387 206 323
Tol-Pal system protein TolB.
PRK04792 tolB 1.72e-07 245 387 225 342
Tol-Pal system protein TolB.
PRK01029 tolB 1.78e-07 218 390 167 324
Tol-Pal system protein TolB.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BBV64467.1 1.45e-307 1 391 1 391
QGH28929.1 3.83e-303 1 391 1 391
QGH37911.1 3.83e-303 1 391 1 391
VDZ86573.1 3.83e-303 1 391 1 391
BBQ82411.1 5.01e-299 1 391 1 391

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3PE7_A 3.97e-214 1 383 1 383
Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081]
3C5M_A 1.50e-192 2 383 2 383
Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P21258 2.66e-207 1 383 1 383
Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2
Q59418 1.19e-203 1 383 1 383
Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000055 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003358_01706.