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CAZyme Information: MGYG000003375_01672

You are here: Home > Sequence: MGYG000003375_01672

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Corynebacterium striatum
Lineage Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium striatum
CAZyme ID MGYG000003375_01672
CAZy Family CE1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
655 MGYG000003375_35|CGC3 71157.42 5.4128
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003375 2788808 MAG United States North America
Gene Location Start: 243784;  End: 245751  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003375_01672.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE1 118 380 1.2e-53 0.947136563876652

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0627 FrmB 2.14e-63 118 383 56 313
S-formylglutathione hydrolase FrmB [Defense mechanisms].
COG5479 Psp3 4.59e-45 387 655 79 376
Uncharacterized conserved protein, contains LGFP repeats [Function unknown].
pfam00756 Esterase 1.14e-41 108 378 1 246
Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family.
pfam08310 LGFP 2.48e-19 461 512 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].
pfam08310 LGFP 3.47e-14 567 617 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QQE52113.1 0.0 1 655 1 655
ATZ06851.1 0.0 1 655 1 655
ATZ08810.1 0.0 1 655 1 655
ART20424.1 0.0 1 655 1 655
AMO91982.1 0.0 1 655 1 655

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SX4_AAA 1.92e-256 79 651 40 611
ChainAAA, Protein PS1 [Corynebacterium glutamicum],6SX4_BBB Chain BBB, Protein PS1 [Corynebacterium glutamicum],6SX4_CCC Chain CCC, Protein PS1 [Corynebacterium glutamicum],6SX4_DDD Chain DDD, Protein PS1 [Corynebacterium glutamicum]
6SWZ_AAA 3.32e-98 408 651 7 249
ChainAAA, Protein PS1 [Corynebacterium glutamicum]
1SFR_A 3.23e-46 135 383 35 284
ChainA, Antigen 85-A [Mycobacterium tuberculosis],1SFR_B Chain B, Antigen 85-A [Mycobacterium tuberculosis],1SFR_C Chain C, Antigen 85-A [Mycobacterium tuberculosis]
1F0N_A 9.43e-45 135 383 34 283
ChainA, ANTIGEN 85B [Mycobacterium tuberculosis],1F0P_A Chain A, ANTIGEN 85-B [Mycobacterium tuberculosis]
4MQL_A 4.09e-44 137 371 36 271
ChainA, Diacylglycerol acyltransferase/mycolyltransferase Ag85C [Mycobacterium tuberculosis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1D6 7.09e-268 23 651 22 654
Protein PS1 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=csp1 PE=1 SV=1
P0C1D7 2.33e-266 23 651 22 654
Protein PS1 OS=Corynebacterium melassecola OX=41643 GN=csp1 PE=4 SV=1
Q49575 2.70e-47 135 383 74 323
Diacylglycerol acyltransferase/mycolyltransferase Ag85B OS=Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600) OX=487521 GN=fbpB PE=3 SV=2
Q05861 1.89e-46 89 383 35 325
Diacylglycerol acyltransferase/mycolyltransferase Ag85A OS=Mycobacterium leprae (strain TN) OX=272631 GN=fbpA PE=3 SV=3
A1KQD8 4.23e-45 135 383 77 326
Diacylglycerol acyltransferase/mycolyltransferase Ag85A OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) OX=410289 GN=fbpA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.004269 0.994569 0.000534 0.000214 0.000200 0.000196

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003375_01672.