logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003476_00584

You are here: Home > Sequence: MGYG000003476_00584

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA7642 sp900549915
Lineage Bacteria; Firmicutes; Bacilli; RFN20; CAG-288; UBA7642; UBA7642 sp900549915
CAZyme ID MGYG000003476_00584
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
513 MGYG000003476_14|CGC2 58958.12 8.5575
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003476 1713396 MAG Fiji Oceania
Gene Location Start: 48467;  End: 50008  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003476_00584.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 108 473 1.9e-56 0.9076923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.79e-60 1 443 1 466
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.33e-18 185 374 54 239
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03010 PLN03010 3.58e-16 96 389 79 320
polygalacturonase
PLN02793 PLN02793 1.61e-13 166 392 128 342
Probable polygalacturonase
PLN03003 PLN03003 2.36e-13 190 389 119 301
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ACZ98650.1 8.25e-132 3 509 2 515
QEH68470.1 1.20e-130 3 509 2 512
ADZ82954.1 6.78e-130 3 509 2 512
CCV65872.1 1.62e-127 12 499 11 499
ABR47121.1 1.76e-125 1 509 1 517

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 1.75e-28 105 400 59 372
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
2UVE_A 5.67e-15 46 356 115 469
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 6.97e-47 230 440 36 247
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 8.20e-25 105 471 97 441
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P35337 8.80e-14 188 389 109 303
Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1
P15922 6.79e-13 47 395 119 499
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
Q7M1E7 3.13e-12 188 389 150 346
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000045 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003476_00584.