CAZyme Information: MGYG000004510_00262

Basic Information

• Species: Prevotella sp002481295
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp002481295
• CAZyme ID: MGYG000004510_00262
• CAZy Family: PL11
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1517	MGYG000004510_3|CGC1	163026.65	5.8334

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004510	3097673	MAG	Israel	Asia

• Gene Location: Start: 58863; End: 63416 Strand: +

Full Sequence      

MRKKYILVGLLAMFLSTGAQAQRVTDKLDRGLVAVKTSGGVFCSWRINAEEYYAVTYNLY
RDGVKVNDKPLTVSNYTDPAGTTSSTYTVRPIIKGVEQTTSSKAASVLAYDYLEIAKPKR
FSNDGKTDVTDVYQPNDATIADVDGDGEMELIVKELCTTDDPKNKPDGPDFDRIEVFKLN
GDLLWWIDCGPNLCDFQHNETNIAAYDWDGDGKAECIMRAADGTILHTATGKTIVVGDKS
KNYRADCQNGSMAEFFVHSGAEYLLYLNGKTGEPYQIGPAEHPDYMDYPLKRLEDGETDL
KKAWGDGYGHRSSKNFFGAPYLDGHKPSIFLARGIYTRHKMIALDVNPATHHLSTRWRWN
CTTPGPWYGQGYHNYTIADVDWDGRDEICFGSMVIDDNGKGLSTTGLGHGDAQHVGDFDP
YRHGQEIFACNEDAPANNYRDATTSKIYYRLAGGGDDGRSMMGNFTDDVPGAIGASGHDT
PISAVTAKHTDNTSKDFDLNFRIYWDGDLLEETLNGTQARNSTFRIHKYGKGDIKTLDGS
LSNNDTKATPCFQGDIFGDWREEVVARTPDNKIRIYTTTDPTEYRNCTLLSDKQYRNAMV
WQMNGYNQPPHVSYFLGKKEGITMAPPPETTNGRTVVNNGGSIGTGLNDKQVLLDENNDM
TVSVSDGAAPYIFFDNAPTWVQGHDDNNNITTTSYTHTLTGGAFAGAMRLIKQGDGTLVL
PKVDEKYTGNTDVWAGTLVFDGTLKSSRLWLNRFANLHSDGGTFSAIKADYGAAVRPGGQ
DKVGTITTDTLKLGFGSIVDFDIDASSNADQIVVNKVMSIEQKDWTQGPEYLVPRFNFHF
IDGNVKAGSYALGKVQKVDGDISKVAVTGLNGHKAALSVNGGNLVLTIADTRQATNVEWS
GVQGSTWNIADAENFTNTSEKTSDVFVSGDHVTFNDNAASSTVVIKGEVSPASVTFDNSK
LEYDLSGDAITGNTTITKKGSATATLHNVNDFTGSVNIENGTLAVDHLGQKSGVNNGALG
VYTNKVTLNGGALEALANLTTDHPVMLGSKGGTILVDEGKTLTLNAGITGNGNVLTKAGK
GTLTLAPSANYGTLNVMAGWVNGQEKDNAHGYPKNIVLNNGTTLSDADNISSYSSNGVNV
KVPKGATASWYLDSRCNYTGQLTGGGTLNLYSRSTRAYLKGYWGDFTGRLNIAGKKTGSY
DPMLYVQGSLKNAEINATITLNNNGSNVAVGSLSGSAELDGKGTWSVGGNDKDFIFQGYI
NGGGLIKIGNGMMTIGKKQDKLSKQVDVQGGTLNINSSATNVTADNRWFGSQSVSVTGGG
CFAGRGVVEKILVNDGGTLQPGNAANAIQYGALKTANGCYLYKGAKVLFNIYSTKLYPSL
ATNGTLSLADGSTVAVALNSKYAPKVGDTFTLWDVTTLNATADGVTLQLPTLPKGFAWDT
SELFQQKGLLKVVAATGINQLTADAVFHCEVFKTNGARVGVLTTTKASLNEDIRGLHVEP
GLYLVKVGATTMKVLVK

Enzyme Prediction     

No EC number prediction in MGYG000004510_00262.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL11	25	620	3.6e-159	0.9777015437392796

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd10318	RGL11	4.06e-170	26	614	2	564	Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.
pfam18370	RGI_lyase	8.34e-36	23	107	1	85	Rhamnogalacturonan I lyases beta-sheet domain. This is the beta-sheet domain found in rhamnogalacturonan (RG) lyases, which are responsible for an initial cleavage of the RG type I (RG-I) region of plant cell wall pectin. Polysaccharide lyase family 11 carrying this domain, such as YesW (EC:4.2.2.23) and YesX (EC:4.2.2.24), cleave glycoside bonds between rhamnose and galacturonic acid residues in RG-I through a beta-elimination reaction. Other family members carrying this domain are hemagglutinin A, lysine gingipain (Kgp) and Chitinase C (EC:3.2.1.14).
PRK15319	PRK15319	1.65e-05	853	1091	686	958	fibronectin-binding autotransporter adhesin ShdA.
PRK15319	PRK15319	6.58e-04	915	1297	635	1039	fibronectin-binding autotransporter adhesin ShdA.
PRK09752	PRK09752	0.001	962	1135	314	511	AIDA-I family autotransporter YfaL.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QIM09959.1	0.0	13	1507	2	1528
AGB29439.1	0.0	1	1514	1	1516
BCS86257.1	1.42e-313	24	909	1	890
ABN51485.1	6.82e-131	23	629	257	813
ADU75030.1	1.31e-130	17	629	254	813

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
2Z8R_A	2.15e-127	21	628	1	578	Crystalstructure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8R_B Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8S_A Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2Z8S_B Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2ZUX_A Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis],2ZUX_B Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis]
4CAG_A	2.05e-120	17	628	4	585	Bacilluslicheniformis Rhamnogalacturonan Lyase PL11 [Bacillus licheniformis]
2ZUY_A	1.92e-117	22	628	5	599	Crystalstructure of exotype rhamnogalacturonan lyase YesX [Bacillus subtilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O31526	2.83e-126	21	628	38	615	Rhamnogalacturonan endolyase YesW OS=Bacillus subtilis (strain 168) OX=224308 GN=yesW PE=1 SV=1
O31527	8.34e-117	22	628	5	599	Rhamnogalacturonan exolyase YesX OS=Bacillus subtilis (strain 168) OX=224308 GN=yesX PE=1 SV=1
A0A0H3GGE2	5.02e-06	970	1070	2027	2118	Adhesin BmaC autotransporter OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=bmaC PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000351	0.998791	0.000313	0.000188	0.000165	0.000152

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004510_00262.