Species | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; | |||||||||||
CAZyme ID | MGYG000004708_00425 | |||||||||||
CAZy Family | PL6 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 13180; End: 15345 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
PL6 | 33 | 395 | 3.2e-118 | 0.9704301075268817 |
PL6 | 451 | 650 | 3.4e-38 | 0.5821325648414986 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
cd14251 | PL-6 | 2.73e-153 | 34 | 395 | 6 | 367 | Polysaccharide Lyase Family 6. Polysaccharide Lyase Family 6 is a family of beta-helical polysaccharide lyases. Members include alginate lyase (EC 4.2.2.3) and chondroitinase B (EC 4.2.2.19). Chondroitinase B is an enzyme that only cleaves the beta-(1,4)-linkage of dermatan sulfate (DS), leading to 4,5-unsaturated dermatan sulfate disaccharides as the product. DS is a highly sulfated, unbranched polysaccharide belonging to a family of glycosaminoglycans (GAGs) composed of alternating hexosamine (gluco- or galactosamine) and uronic acid (D-glucuronic or L-iduronic acid) moieties. DS contains alternating 1,4-beta-D-galactosamine (GalNac) and 1,3-alpha-L-iduronic acid units. The related chondroitin sulfate (CS) contains alternating GalNac and 1,3-beta-D-glucuronic acid units. Alginate lyases (known as either mannuronate (EC 4.2.2.3) or guluronate lyases (EC 4.2.2.11) catalyze the degradation of alginate, a copolymer of alpha-L-guluronate and its C5 epimer beta-D-mannuronate. |
pfam14592 | Chondroitinas_B | 4.30e-110 | 33 | 415 | 5 | 403 | Chondroitinase B. This family includes chondroitinases. These enzymes cleave the glycosaminoglycan dermatan sulfate. |
pfam13229 | Beta_helix | 3.17e-06 | 505 | 651 | 26 | 139 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
pfam13229 | Beta_helix | 1.08e-05 | 540 | 719 | 4 | 157 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
pfam13229 | Beta_helix | 4.70e-04 | 217 | 344 | 29 | 139 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QIU93442.1 | 4.87e-281 | 4 | 717 | 3 | 723 |
QUT26279.1 | 1.71e-279 | 4 | 717 | 3 | 723 |
QNL39961.1 | 2.60e-272 | 19 | 717 | 18 | 723 |
QNT66846.1 | 1.04e-259 | 1 | 708 | 1 | 706 |
QRQ49286.1 | 1.94e-203 | 32 | 708 | 27 | 710 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
7DMK_A | 1.82e-208 | 28 | 708 | 13 | 700 | ChainA, BcAlyPL6 [Bacteroides clarus],7DMK_B Chain B, BcAlyPL6 [Bacteroides clarus],7DMK_C Chain C, BcAlyPL6 [Bacteroides clarus],7DMK_D Chain D, BcAlyPL6 [Bacteroides clarus] |
7O7T_A | 2.67e-120 | 32 | 711 | 7 | 710 | ChainA, Poly(Beta-D-mannuronate) lyase [Pseudoalteromonas atlantica T6c] |
7O77_A | 2.67e-120 | 32 | 711 | 7 | 710 | ChainA, Poly(Beta-D-mannuronate) lyase [Pseudoalteromonas atlantica T6c] |
5GKD_A | 1.31e-118 | 38 | 654 | 14 | 653 | Structureof PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_B Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_C Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_D Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis] |
5GKQ_A | 1.01e-117 | 38 | 654 | 14 | 653 | Structureof PL6 family alginate lyase AlyGC mutant-R241A [Paraglaciecola chathamensis S18K6],5GKQ_B Structure of PL6 family alginate lyase AlyGC mutant-R241A [Paraglaciecola chathamensis S18K6] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q06365 | 1.87e-66 | 44 | 405 | 2 | 354 | Alginate lyase OS=Pseudomonas sp. (strain OS-ALG-9) OX=86038 GN=aly PE=3 SV=1 |
Q46079 | 8.33e-32 | 30 | 341 | 28 | 349 | Chondroitinase-B OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) OX=485917 GN=cslB PE=1 SV=2 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000246 | 0.999116 | 0.000165 | 0.000167 | 0.000149 | 0.000137 |
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