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CAZyme Information: MGYG000004797_00061

You are here: Home > Sequence: MGYG000004797_00061

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola sartorii
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sartorii
CAZyme ID MGYG000004797_00061
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
461 MGYG000004797_1|CGC2 52137.57 5.9136
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004797 5247182 MAG China Asia
Gene Location Start: 106873;  End: 108258  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004797_00061.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 182 442 2e-43 0.76

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 7.56e-11 209 414 239 458
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 9.68e-09 188 442 88 307
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 4.76e-06 210 384 229 406
Probable polygalacturonase
PLN03010 PLN03010 4.27e-05 168 376 115 311
polygalacturonase
pfam13229 Beta_helix 6.90e-04 210 319 48 149
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QQY39815.1 0.0 1 461 1 461
ABR37851.1 0.0 1 461 1 461
QJR77942.1 1.09e-317 1 461 4 464
AII64640.1 2.20e-317 1 461 1 461
QUT85436.1 6.59e-317 1 461 1 461

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B8MW78 9.47e-06 195 440 260 478
Probable endopolygalacturonase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaD PE=3 SV=1
Q2UT29 9.47e-06 195 440 260 478
Probable endopolygalacturonase D OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaD PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000251 0.999052 0.000222 0.000154 0.000148 0.000141

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004797_00061.