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CAZyme Information: MGYG000004826_00708

You are here: Home > Sequence: MGYG000004826_00708

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UMGS1810 sp900555295
Lineage Bacteria; Firmicutes_A; Clostridia; UMGS1810; UMGS1810; UMGS1810; UMGS1810 sp900555295
CAZyme ID MGYG000004826_00708
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
609 MGYG000004826_51|CGC1 68376.87 4.9966
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004826 1840096 MAG Denmark Europe
Gene Location Start: 7850;  End: 9679  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004826_00708.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 27 307 6.3e-43 0.8338461538461538

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.63e-08 28 340 190 491
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 5.41e-06 60 301 141 374
polygalacturonase
PLN03003 PLN03003 2.65e-05 49 164 104 221
Probable polygalacturonase At3g15720
PLN02793 PLN02793 3.00e-04 81 248 178 343
Probable polygalacturonase
pfam00295 Glyco_hydro_28 0.001 81 297 86 304
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ93866.1 2.79e-184 1 609 95 716
BCJ98361.1 1.18e-176 17 606 112 713
APA66227.1 1.93e-40 17 326 159 497
SDS06655.1 4.46e-40 17 326 172 510
AWW32777.1 3.01e-38 17 325 161 499

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999974 0.000050 0.000026 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004826_00708.