| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 27473.m000043 |
| Family | PL5 |
| Protein Properties | Length: 302 Molecular Weight: 32891.4 Isoelectric Point: 8.2399 |
| Chromosome | Chromosome/Scaffold: 27473 Start: 1277 End: 2185 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL5 | 16 | 259 | 0 |
| HAAACEAPPPARIDIEANSYYSDAHHSVIDPVKRAQNIANTRPIEDFLSHVAQDANGRDAACALTWMASWGEQQAMLGKMSSEQAYYVRKWTLGGLALNY ARVKQQATPAQRAVIENWFKALADATIAHSDARKGTRNNHYYWEGLAVTAVGGVTGEARYLDWGRKVLQHALGQMEADGSLPAEMERAAKALHYQVFAAT PLVMIASILDVRDPRLDTLVAFTVAGSADPSGIARRTGFEQEPV | |||
| Full Sequence |
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| Protein Sequence Length: 302 Download |
| MVKRLTSVLL LALAGHAAAC EAPPPARIDI EANSYYSDAH HSVIDPVKRA QNIANTRPIE 60 DFLSHVAQDA NGRDAACALT WMASWGEQQA MLGKMSSEQA YYVRKWTLGG LALNYARVKQ 120 QATPAQRAVI ENWFKALADA TIAHSDARKG TRNNHYYWEG LAVTAVGGVT GEARYLDWGR 180 KVLQHALGQM EADGSLPAEM ERAAKALHYQ VFAATPLVMI ASILDVRDPR LDTLVAFTVA 240 GSADPSGIAR RTGFEQEPVG SREVTIIYNR HVGKPPPPAG KALWQPRLGG SLEVPNPLEH 300 LQ |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00244 | AlgLyase | 1.0e-28 | 68 | 257 | 205 | + Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond. | ||
| pfam05426 | Alginate_lyase | 3.0e-33 | 29 | 246 | 274 | + Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold. | ||
| PRK00325 | algL | 3.0e-48 | 35 | 292 | 287 | + poly(beta-D-mannuronate) lyase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0042122 | alginic acid catabolic process |
| GO:0042597 | periplasmic space |
| GO:0045135 | poly(beta-D-mannuronate) lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002535640.1 | 0 | 1 | 302 | 1 | 302 | Alginate lyase precursor, putative [Ricinus communis] |
| RefSeq | XP_002538750.1 | 0 | 20 | 301 | 23 | 314 | Alginate lyase precursor, putative [Ricinus communis] |
| RefSeq | YP_001971319.1 | 1.4013e-45 | 29 | 294 | 32 | 319 | putative alginate lyase [Stenotrophomonas maltophilia K279a] |
| RefSeq | YP_787335.1 | 0 | 20 | 258 | 37 | 293 | alginate lyase [Bordetella avium 197N] |
| RefSeq | ZP_05134914.1 | 6e-29 | 18 | 163 | 22 | 177 | alginate lyase [Stenotrophomonas sp. SKA14] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1qaz_A | 1e-16 | 75 | 221 | 107 | 255 | A Chain A, Crystal Structure Of Alginate Lyase A1-Iii From Sphingomonas Species A1 At 1.78a Resolution |
| PDB | 1hv6_A | 1e-16 | 75 | 221 | 107 | 255 | A Chain A, Crystal Structure Of Alginate Lyase A1-Iii From Sphingomonas Species A1 At 1.78a Resolution |
| PDB | 4f13_B | 4e-16 | 75 | 221 | 107 | 255 | A Chain A, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide |
| PDB | 4f13_A | 4e-16 | 75 | 221 | 107 | 255 | A Chain A, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide |
| PDB | 4f10_B | 0.000000000000004 | 75 | 221 | 107 | 255 | A Chain A, Alginate Lyase A1-Iii H192a Complexed With Tetrasaccharide |
| Signal Peptide | |||||
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| Cleavage Site | |||||
| 19 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EV144880 | 141 | 31 | 161 | 1e-27 |
| GT692212 | 122 | 190 | 294 | 0.00000006 |
| GR716656 | 122 | 190 | 294 | 0.00000006 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Ricinus communis | 35969.m000014 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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