| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 35969.m000014 |
| Family | PL5 |
| Protein Properties | Length: 322 Molecular Weight: 35039.9 Isoelectric Point: 8.3243 |
| Chromosome | Chromosome/Scaffold: 35969 Start: 74 End: 1042 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL5 | 12 | 280 | 0 |
| IAALAARQACACEAPPPAVIDIDANSYYSDSHHSIVDPVRKARNEAAVKPVNDYLDAVAHAAVAWQQTHRDADARCALTWLADWADRKAMLGTMTTEQSY YTRKWTLGGLALSYARVKPAATPDERRRIEAWLLALADATIRHSDAHKGVRNNHYYWEGLAVTATGAVTGDARCLAWGRKAFDDAMAQIRPDGVLPYELE RAGRALHYHLYAAAPLVMMASIFNVQSPQLDRLIAFSVAGVADPSTFAKMTGVEQEWSGGVPGWIAIWL | |||
| Full Sequence |
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| Protein Sequence Length: 322 Download |
| MRIRGIGAVM FIAALAARQA CACEAPPPAV IDIDANSYYS DSHHSIVDPV RKARNEAAVK 60 PVNDYLDAVA HAAVAWQQTH RDADARCALT WLADWADRKA MLGTMTTEQS YYTRKWTLGG 120 LALSYARVKP AATPDERRRI EAWLLALADA TIRHSDAHKG VRNNHYYWEG LAVTATGAVT 180 GDARCLAWGR KAFDDAMAQI RPDGVLPYEL ERAGRALHYH LYAAAPLVMM ASIFNVQSPQ 240 LDRLIAFSVA GVADPSTFAK MTGVEQEWSG GVPGWIAIWL RHGGKVAVPV KLPAVNWDAR 300 MGGDRNLANP LEHVVTGSGS SS |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00244 | AlgLyase | 1.0e-27 | 57 | 267 | 226 | + Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond. | ||
| pfam05426 | Alginate_lyase | 4.0e-31 | 32 | 258 | 282 | + Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold. | ||
| PRK00325 | algL | 4.0e-45 | 32 | 304 | 292 | + poly(beta-D-mannuronate) lyase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0042122 | alginic acid catabolic process |
| GO:0042597 | periplasmic space |
| GO:0045135 | poly(beta-D-mannuronate) lyase activity |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1qaz_A | 1e-20 | 13 | 307 | 38 | 346 | A Chain A, Crystal Structure Of Alginate Lyase A1-Iii From Sphingomonas Species A1 At 1.78a Resolution |
| PDB | 1hv6_A | 1e-20 | 13 | 307 | 38 | 346 | A Chain A, Crystal Structure Of Alginate Lyase A1-Iii From Sphingomonas Species A1 At 1.78a Resolution |
| PDB | 4f13_B | 3e-20 | 13 | 307 | 38 | 346 | A Chain A, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide |
| PDB | 4f13_A | 3e-20 | 13 | 307 | 38 | 346 | A Chain A, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide |
| PDB | 4f10_B | 2e-19 | 13 | 307 | 38 | 346 | A Chain A, Alginate Lyase A1-Iii H192a Complexed With Tetrasaccharide |
| Signal Peptide | |||||
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| Cleavage Site | |||||
| 22 | |||||
| Hydropathy |
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| Orthologous Group | |||||
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| Species | ID | ||||
| Ricinus communis | 27473.m000043 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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