| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30042.m000466 |
| Family | GH28 |
| Protein Properties | Length: 307 Molecular Weight: 32816.3 Isoelectric Point: 8.611 |
| Chromosome | Chromosome/Scaffold: 30042 Start: 22368 End: 24777 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 157 | 295 | 4.30199e-43 |
| IGIGSLGKDLQEAGVQNVTVKTAKFTGTQNGLRIKSWGRPSNGFARNILFQHATMIDVKNPIVIDQNYCPHNKNCPGQVSGVQISGVTYQDIHGTSATEV AVRFDCSKKTPCTGIKMEDIRLTYRNQPADASCNNADGR | |||
| Full Sequence |
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| Protein Sequence Length: 307 Download |
| MSNPFILVFY FIFITSPLVT SAQFNVLSYG ANPDGRTDCT KAFLTAWTQA CASTRPAIIS 60 VPPGRFLVSK LLFQGPCKNN AVLLSVDGST LVAPSDYWAT GNAQNWLIFE YVDGVTISGG 120 ILDGQGMSLW SCKASGKKCP TGATSLGFSN SNNIAIIGIG SLGKDLQEAG VQNVTVKTAK 180 FTGTQNGLRI KSWGRPSNGF ARNILFQHAT MIDVKNPIVI DQNYCPHNKN CPGQVSGVQI 240 SGVTYQDIHG TSATEVAVRF DCSKKTPCTG IKMEDIRLTY RNQPADASCN NADGRTSGFV 300 QPSSCLS |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-15 | 24 | 133 | 116 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-29 | 5 | 146 | 143 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-32 | 162 | 307 | 147 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-33 | 162 | 292 | 131 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02155 | PLN02155 | 6.0e-53 | 162 | 307 | 147 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26511.1 | 0 | 24 | 307 | 51 | 417 | polygalacturonase precursor [Cucumis melo] |
| RefSeq | XP_002529088.1 | 0 | 1 | 307 | 1 | 307 | conserved hypothetical protein [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 6 | 194 | 11 | 206 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 157 | 306 | 244 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529093.1 | 0 | 24 | 307 | 30 | 320 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000002 | 147 | 279 | 233 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 0.005 | 14 | 67 | 18 | 70 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.005 | 14 | 67 | 18 | 70 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.005 | 14 | 67 | 18 | 70 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.005 | 14 | 67 | 18 | 70 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Transmembrane Domains | ||||
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| Start | End | |||
| 5 | 27 | |||
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 22 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EE255801 | 145 | 162 | 306 | 0 |
| GW620205 | 145 | 162 | 306 | 0 |
| DW356925 | 145 | 162 | 306 | 0 |
| DW358417 | 145 | 162 | 306 | 0 |
| HX869917 | 145 | 162 | 306 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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