Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G006300.1 |
Family | GH28 |
Protein Properties | Length: 259 Molecular Weight: 28404.5 Isoelectric Point: 8.4726 |
Chromosome | Chromosome/Scaffold: 17 Start: 423678 End: 425034 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 230 | 1.4e-34 |
FHIVINGCQNINMQGVTLSASRKSPDTDGIHVQLSTGVTILNTKNKNTRKFLSIGVDTTNLSIENVACGPVMNKDLEESGVQNEMVKNVTLAGSQNGLRI KSWGRPSNGFAKDILSQHIAMNNVQNPIVIYQNYCHENKDCPGQVTSVLNDLRITVI |
Full Sequence |
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Protein Sequence Length: 259 Download |
MNGLIEYYCY RILLCDGVCR RQQFTKVKNC TSFYNESMVL RAASATASAG SSGSVAVIWI 60 YQIKKYGDHG IKIFHIVING CQNINMQGVT LSASRKSPDT DGIHVQLSTG VTILNTKNKN 120 TRKFLSIGVD TTNLSIENVA CGPVMNKDLE ESGVQNEMVK NVTLAGSQNG LRIKSWGRPS 180 NGFAKDILSQ HIAMNNVQNP IVIYQNYCHE NKDCPGQVTS VLNDLRITVI PLEDVKLTYR 240 NGPADDIVIH FTGCLPSL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-19 | 75 | 207 | 140 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 6.0e-25 | 75 | 221 | 154 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-27 | 72 | 208 | 145 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-28 | 72 | 237 | 179 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02155 | PLN02155 | 3.0e-40 | 72 | 253 | 214 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP21999.1 | 0 | 72 | 253 | 140 | 352 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 72 | 253 | 169 | 381 | polygalacturonase [Prunus domestica subsp. insititia] |
RefSeq | XP_002331621.1 | 0 | 72 | 245 | 172 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331631.1 | 0 | 1 | 258 | 17 | 274 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 72 | 245 | 169 | 373 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00007 | 74 | 213 | 175 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE255801 | 205 | 72 | 245 | 0 |
FC861099 | 210 | 72 | 250 | 0 |
DW353868 | 208 | 74 | 250 | 0 |
CO903590 | 210 | 72 | 250 | 0 |
DW359075 | 204 | 73 | 245 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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