PlantCAZyme

Basic Information
Species	Arabidopsis lyrata
Cazyme ID	324620
Family	GH17
Protein Properties	Length: 375 Molecular Weight: 41904.7 Isoelectric Point: 10.1635
Chromosome	Chromosome/Scaffold: 5 Start: 20491702 End: 20493017
Description	Glycosyl hydrolase family 17 protein
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH17	54	370	0
IGINYGRYGSNLPQPEAIPSLVNSLSIKHVKTFDLDPRITKSFANTGITLSLCIPNDKIPSLATNLSQAESIIRNFILPYHKNTIITTISVGNEVSLLPQ FSNHLVSAMVNVHKAIKRYRLHKKIKVSTTHSLAILSRRFPPSTAIFHQSIGDSVLKPLIRFLQRTNSPLMVNVYPYLAYKQSFPSIPLDFALFQPMNSP KRRRYIDPYTGVAYTNLFDIMLDSVDSAVKSLGLPKIPVVVSEIGWPSSGDPGETAANLENARVFNQRLVEHLRRRWNKVPVYIFALFDEDQKTGAAVEK HWGLLHGNGSRKYDLNF

Full Sequence
Protein Sequence Length: 375 Download
MKMIHMTTMK YAFWILLVFS ISMASCSMIP SLGGPQIGIN YGLYSSNLED SPVIGINYGR 60 YGSNLPQPEA IPSLVNSLSI KHVKTFDLDP RITKSFANTG ITLSLCIPND KIPSLATNLS 120 QAESIIRNFI LPYHKNTIIT TISVGNEVSL LPQFSNHLVS AMVNVHKAIK RYRLHKKIKV 180 STTHSLAILS RRFPPSTAIF HQSIGDSVLK PLIRFLQRTN SPLMVNVYPY LAYKQSFPSI 240 PLDFALFQPM NSPKRRRYID PYTGVAYTNL FDIMLDSVDS AVKSLGLPKI PVVVSEIGWP 300 SSGDPGETAA NLENARVFNQ RLVEHLRRRW NKVPVYIFAL FDEDQKTGAA VEKHWGLLHG 360 NGSRKYDLNF SPPI*

Full Sequence

Protein Sequence Length: 375 Download

MKMIHMTTMK YAFWILLVFS ISMASCSMIP SLGGPQIGIN YGLYSSNLED SPVIGINYGR    60
YGSNLPQPEA IPSLVNSLSI KHVKTFDLDP RITKSFANTG ITLSLCIPND KIPSLATNLS    120
QAESIIRNFI LPYHKNTIIT TISVGNEVSL LPQFSNHLVS AMVNVHKAIK RYRLHKKIKV    180
STTHSLAILS RRFPPSTAIF HQSIGDSVLK PLIRFLQRTN SPLMVNVYPY LAYKQSFPSI    240
PLDFALFQPM NSPKRRRYID PYTGVAYTNL FDIMLDSVDS AVKSLGLPKI PVVVSEIGWP    300
SSGDPGETAA NLENARVFNQ RLVEHLRRRW NKVPVYIFAL FDEDQKTGAA VEKHWGLLHG    360
NGSRKYDLNF SPPI* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG5309	COG5309	1.0e-8	289	361	76	+ Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
pfam00332	Glyco_hydro_17	1.0e-92	54	370	322	+ Glycosyl hydrolases family 17.

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	ABK28613.1	0	1	374	1	375	unknown [Arabidopsis thaliana]
GenBank	ACN28065.1	0	54	371	26	346	unknown [Zea mays]
RefSeq	NP_001144992.1	0	54	371	26	346	hypothetical protein LOC100278152 [Zea mays]
RefSeq	NP_191740.1	0	1	374	1	375	glycosyl hydrolase family 17 protein [Arabidopsis thaliana]
RefSeq	XP_002514201.1	0	53	371	25	345	Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1ghs_B	0	54	370	1	306	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	1ghs_A	0	54	370	1	306	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	3ur8_B	0	54	371	3	315	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	3ur8_A	0	54	371	3	315	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	3ur7_B	0	54	371	3	315	A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase

Transmembrane Domains

Start	End
12	34

Signal Peptide

Cleavage Site
24

EST Download unfiltered results here

Hit	Length	Start	End	EValue
BY808987	155	222	375	0
CB259129	124	252	375	0
CB259129	58	194	251	0
CX270921	154	195	348	0
CX270921	31	342	372	0.001

Orthologous Group
Species	ID
Arabidopsis thaliana	AT3G61810.1
Brassica rapa	Bra003475
Capsella rubella	Carubv10017450m
Thellungiella halophila	Thhalv10006482m

CAZyme Information