PlantCAZyme

Basic Information
Species	Brassica rapa
Cazyme ID	Bra003475
Family	GH17
Protein Properties	Length: 367 Molecular Weight: 40494 Isoelectric Point: 10.2348
Chromosome	Chromosome/Scaffold: 07 Start: 13380961 End: 13382330
Description	Glycosyl hydrolase family 17 protein
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH17	46	361	0
IGINYGRYGSNLPPPEALPSLVTSLSIKHVKTFDMDPRITTSFANTGISLSLCIPNDKIPLLSTNLSEADSIIRAFILPYHKTTIITSISVGNEVSLLPP FTPHLVSAVVNVHRAIKRYRLHKKIKVTTTHSLAILSRRFPPSTARFHNSIGESVLKPLVRFLQRTKSPLMVNVYPYLAYKQSFPSIPLDFALFQPVNGS KRRMYRDPYSGVAYTNLFDIMMDSVDSAVKALGLPKIPVVVSEIGWPSSGDPGEVAASLENARVFNQRLVEHLRRGEKKVTVYIFALFDEDQKSGATVEK HWGLLYGNGTKKYDLN

Full Sequence
Protein Sequence Length: 367 Download
MMIPSFWILA IFSISMASSS TIPSLRGPGI GTNYGRYSSN LGVPEIGINY GRYGSNLPPP 60 EALPSLVTSL SIKHVKTFDM DPRITTSFAN TGISLSLCIP NDKIPLLSTN LSEADSIIRA 120 FILPYHKTTI ITSISVGNEV SLLPPFTPHL VSAVVNVHRA IKRYRLHKKI KVTTTHSLAI 180 LSRRFPPSTA RFHNSIGESV LKPLVRFLQR TKSPLMVNVY PYLAYKQSFP SIPLDFALFQ 240 PVNGSKRRMY RDPYSGVAYT NLFDIMMDSV DSAVKALGLP KIPVVVSEIG WPSSGDPGEV 300 AASLENARVF NQRLVEHLRR GEKKVTVYIF ALFDEDQKSG ATVEKHWGLL YGNGTKKYDL 360 NISPPV*

Full Sequence

Protein Sequence Length: 367 Download

MMIPSFWILA IFSISMASSS TIPSLRGPGI GTNYGRYSSN LGVPEIGINY GRYGSNLPPP    60
EALPSLVTSL SIKHVKTFDM DPRITTSFAN TGISLSLCIP NDKIPLLSTN LSEADSIIRA    120
FILPYHKTTI ITSISVGNEV SLLPPFTPHL VSAVVNVHRA IKRYRLHKKI KVTTTHSLAI    180
LSRRFPPSTA RFHNSIGESV LKPLVRFLQR TKSPLMVNVY PYLAYKQSFP SIPLDFALFQ    240
PVNGSKRRMY RDPYSGVAYT NLFDIMMDSV DSAVKALGLP KIPVVVSEIG WPSSGDPGEV    300
AASLENARVF NQRLVEHLRR GEKKVTVYIF ALFDEDQKSG ATVEKHWGLL YGNGTKKYDL    360
NISPPV* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG5309	COG5309	5.0e-10	281	353	76	+ Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
pfam00332	Glyco_hydro_17	1.0e-86	46	361	323	+ Glycosyl hydrolases family 17.

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	ABK28613.1	0	2	366	9	375	unknown [Arabidopsis thaliana]
EMBL	CAB36529.1	0	46	360	25	341	putative beta-1, 3-glucanase [Arabidopsis thaliana]
RefSeq	NP_191740.1	0	2	366	9	375	glycosyl hydrolase family 17 protein [Arabidopsis thaliana]
RefSeq	NP_194413.2	0	46	360	25	341	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana]
RefSeq	XP_002514201.1	0	46	363	26	345	Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	3f55_D	0	45	363	1	316	A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
PDB	3f55_C	0	45	363	1	316	A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
PDB	3f55_B	0	45	363	1	316	A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
PDB	3f55_A	0	45	363	1	316	A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
PDB	3em5_D	0	45	363	1	316	A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis

Signal Peptide

Cleavage Site
17

EST Download unfiltered results here

Hit	Length	Start	End	EValue
CX270921	162	187	347	0
BY808987	155	214	367	0
CB259129	122	246	367	0
CB259129	66	186	251	0
CX270921	215	168	364	0.00000000003

Orthologous Group
Species	ID
Arabidopsis lyrata	324620
Arabidopsis thaliana	AT3G61810.1
Capsella rubella	Carubv10017450m
Thellungiella halophila	Thhalv10006482m

CAZyme Information