CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra029980
FamilyGH43
Protein PropertiesLength: 462 Molecular Weight: 52380.5 Isoelectric Point: 7.3405
ChromosomeChromosome/Scaffold: 01 Start: 15480045 End: 15481534
Descriptionglycosyl hydrolase family protein 43
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH431533799.3e-34
  KSKSYYWYGEYKDGVTYHSHKKGAARVDIIGVGCYSSKDLWTWKNEGVVLAAEETDETHDLHKLNVLERPKVIYNSDTGKYVMWMHVDDANYTKASVGVA
  TSDTPTGPFDYLYSKSPHGFDSRDMTVFKDDDNTAYLVYSSEDNSVMHIGPLTEDYLDVEPVMKRIMVGQHREAPAVFKHQNTYYMITSGCTGWAPNEAL
  AHAAESIMGPWETLGNPCVGGNKVFRS
Full Sequence
Protein Sequence     Length: 462     Download
MVKNKHNKKP TTLLRLVSTL VGCVFIIHLI MLYRRNCSVD NLEVSSQLLI HHPVVHELER    60
VEEENIRMPP PRKRSPRAIK RKPKRPTTLV EEFLDENSQI RHLFFPDMTS SFGPTKDGGN    120
NDTLHRFFPG KIWLDTEGNP IQAHGGGMLY DEKSKSYYWY GEYKDGVTYH SHKKGAARVD    180
IIGVGCYSSK DLWTWKNEGV VLAAEETDET HDLHKLNVLE RPKVIYNSDT GKYVMWMHVD    240
DANYTKASVG VATSDTPTGP FDYLYSKSPH GFDSRDMTVF KDDDNTAYLV YSSEDNSVMH    300
IGPLTEDYLD VEPVMKRIMV GQHREAPAVF KHQNTYYMIT SGCTGWAPNE ALAHAAESIM    360
GPWETLGNPC VGGNKVFRST TFFAQGTYVV PLPGVPGGFI FMANRWNPAD LRDSRYLWLP    420
LIVGGPADRP LESSFGFPMW SRVSVYWHRQ WRLPSGGKEI A* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd08999GH43_ABN_21.0e-18186369208+
cd08990GH43_AXH_like1.0e-21186364193+
cd09004GH43_bXyl6.0e-24185368195+
cd08978GH_F4.0e-52157421276+
cd08985GH43_66.0e-129141421282+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCBI33680.105145925432unnamed protein product [Vitis vinifera]
RefSeqNP_190557.1014613466glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqNP_201555.203545450466glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqNP_975008.103545455471glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqXP_002525277.10245634494beta-glucanase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3vt2_F013042145328A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
PDB3vt2_E013042145328A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
PDB3vt2_D013042145328A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
PDB3vt2_C013042145328A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
PDB3vt2_B013042145328A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Transmembrane Domains
StartEnd
1332
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO3743623521144600
GO8561533301274560
EY7037302951384320
GT7395993001274260
GO8017532961614560
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_060_00007.3Aquca_060_00007.1Aquca_060_00007.2
Arabidopsis lyrata906305332819
Arabidopsis thalianaAT5G67540.2AT5G67540.1AT3G49880.1
Brachypodium distachyonBradi2g50980.2Bradi1g71160.1Bradi2g50980.1
Brassica rapaBra024441Bra036036
Capsella rubellaCarubv10027885mCarubv10019437m
Citrus clementinaCiclev10025553mCiclev10025552mCiclev10025561m
Citrus sinensisorange1.1g011114morange1.1g012300morange1.1g012453m
Cucumis sativusCucsa.366970.1Cucsa.366990.1
Eucalyptus grandisEucgr.I00703.2Eucgr.I00703.1Eucgr.H02307.1
Fragaria vescamrna05759.1-v1.0-hybrid
Glycine maxGlyma05g22470.3Glyma17g17390.3Glyma17g17390.2Glyma17g17390.1Glyma05g22470.6
Glyma05g22470.5Glyma05g22470.4Glyma05g22470.2Glyma01g40190.1Glyma11g05100.1
Gossypium raimondiiGorai.011G214500.1Gorai.008G083400.1Gorai.003G030500.1Gorai.003G030500.2
Linum usitatissimumLus10011543Lus10019280
Malus domesticaMDP0000248963MDP0000503275MDP0000406084
Manihot esculentacassava4.1_032973mcassava4.1_007150mcassava4.1_007066m
Medicago truncatulaMedtr5g015460.1Medtr4g097110.1
Mimulus guttatusmgv1a018781mmgv1a005746m
Oryza sativaLOC_Os12g21789.1LOC_Os12g21789.2LOC_Os01g65720.1
Panicum virgatumPavirv00010178mPavirv00067870mPavirv00058950mPavirv00044467m
Physcomitrella patensPp1s410_9V6.1Pp1s16_243V6.1
Phaseolus vulgarisPhvul.003G234900.1Phvul.002G010600.1
Picea abiesMA_181765g0010
Populus trichocarpaPotri.005G148800.1Potri.005G148800.2
Prunus persicappa005306m
Ricinus communis48021.m00001434138.m00001529661.m000924
Setaria italicaSi001388mSi035531m
Selaginella moellendorffii44066110234
Sorghum bicolorSb03g041630.1Sb01g043810.1
Thellungiella halophilaThhalv10004148mThhalv10010347m
Vitis viniferaGSVIVT01000105001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny