CAZyme Information

Basic Information
SpeciesCapsella rubella
Cazyme IDCarubv10027885m
FamilyGH43
Protein PropertiesLength: 475 Molecular Weight: 54363.4 Isoelectric Point: 9.0321
ChromosomeChromosome/Scaffold: 8 Start: 12769411 End: 12770934
DescriptionArabinanase/levansucrase/invertase
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH431733972.4e-34
  KSNTYYWYGEYKDGPTYHAHKKGPARVDIIGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNEKTEKYVMWMHIDDANYTKASVGVA
  ISDKPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYSSEVNSVLHIGPLTEDYLDVTPVMKRVMVGQRREAPAIFKHQNIYYMVTSWCTGWAPNEAL
  AHAAESIMGPWEKLGNPCIGGNKIF
Full Sequence
Protein Sequence     Length: 475     Download
MKNNKYKNKK KPTSLHCNDA GGCRYSLLTV IVWIVVGFFL VAHLISLYTR KDDIHQQVSS    60
DLLQLVHHQH LHHPVVHELV RVEEEILRMP PPRKRSPRTS KRRSRKPIPL VEEFLDDKSP    120
IRHLFFPGMK SAAFGPTKDM GNDSFHYIPG KIWMDTEGNP IQAHGGGILL DEKSNTYYWY    180
GEYKDGPTYH AHKKGPARVD IIGVGCYSSK DLWTWKNEGI VLGAEETNKT HDLHKSNVLE    240
RPKVIYNEKT EKYVMWMHID DANYTKASVG VAISDKPTGP FEYLYSKRPH GFDSRDMTVF    300
KDDDGVAYLI YSSEVNSVLH IGPLTEDYLD VTPVMKRVMV GQRREAPAIF KHQNIYYMVT    360
SWCTGWAPNE ALAHAAESIM GPWEKLGNPC IGGNKIFRLT TFFAQSTYVI PLPGVPGAFI    420
FMADRWNPAD LRDSRYIWLP LVIGGPADQP LEYSFGFPMW SRVSIYWHSK WRLP*         480
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd08999GH43_ABN_21.0e-15242389166+
cd09004GH43_bXyl5.0e-19205388194+
cd08990GH43_AXH_like5.0e-20206384193+
cd08978GH_F9.0e-55175443280+
cd08985GH43_66.0e-130161443284+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCBI33680.107247425427unnamed protein product [Vitis vinifera]
RefSeqNP_190557.1014741458glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqNP_201555.202047414466glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqNP_975008.101347412471glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqXP_002525277.10447436492beta-glucanase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3vt2_F014844143328A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin
PDB3vt2_E014844143328A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin
PDB3vt2_D014844143328A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin
PDB3vt2_C014844143328A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin
PDB3vt2_B014844143328A Chain A, Crysatl Structure Of A Bacterial Cell-Surface Flagellin
Transmembrane Domains
StartEnd
2547
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO8561533301444730
GO3743623451364740
EY7037302951584520
GT7395993021454460
GO8017532941814740
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_060_00007.3Aquca_060_00007.1Aquca_060_00007.2
Arabidopsis lyrata906305332819
Arabidopsis thalianaAT5G67540.2AT5G67540.1AT3G49880.1
Brachypodium distachyonBradi2g50980.2Bradi1g71160.1Bradi2g50980.1
Brassica rapaBra024441Bra029980Bra036036
Capsella rubellaCarubv10019437m
Citrus clementinaCiclev10025553mCiclev10025552mCiclev10025561m
Citrus sinensisorange1.1g011114morange1.1g012300morange1.1g012453m
Cucumis sativusCucsa.366970.1Cucsa.366990.1
Eucalyptus grandisEucgr.I00703.2Eucgr.I00703.1Eucgr.H02307.1
Fragaria vescamrna05759.1-v1.0-hybrid
Glycine maxGlyma05g22470.3Glyma17g17390.3Glyma17g17390.2Glyma17g17390.1Glyma05g22470.6
Glyma05g22470.5Glyma05g22470.4Glyma05g22470.2Glyma01g40190.1Glyma11g05100.1
Gossypium raimondiiGorai.011G214500.1Gorai.008G083400.1Gorai.003G030500.1Gorai.003G030500.2
Linum usitatissimumLus10011543Lus10019280
Malus domesticaMDP0000248963MDP0000503275MDP0000406084
Manihot esculentacassava4.1_032973mcassava4.1_007150mcassava4.1_007066m
Medicago truncatulaMedtr5g015460.1Medtr4g097110.1
Mimulus guttatusmgv1a018781mmgv1a005746m
Oryza sativaLOC_Os12g21789.1LOC_Os12g21789.2LOC_Os01g65720.1
Panicum virgatumPavirv00010178mPavirv00067870mPavirv00058950mPavirv00044467m
Physcomitrella patensPp1s410_9V6.1Pp1s16_243V6.1
Phaseolus vulgarisPhvul.003G234900.1Phvul.002G010600.1
Picea abiesMA_181765g0010
Populus trichocarpaPotri.005G148800.1Potri.005G148800.2
Prunus persicappa005306m
Ricinus communis48021.m00001434138.m00001529661.m000924
Setaria italicaSi001388mSi035531m
Selaginella moellendorffii44066110234
Sorghum bicolorSb03g041630.1Sb01g043810.1
Thellungiella halophilaThhalv10004148mThhalv10010347m
Vitis viniferaGSVIVT01000105001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny