CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra032404
FamilyCBM57
Protein PropertiesLength: 854 Molecular Weight: 94483.2 Isoelectric Point: 6.4794
ChromosomeChromosome/Scaffold: 09 Start: 21710289 End: 21712850
Descriptionhercules receptor kinase 2
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
CBM572313862.4e-21
  YRLNVGGPKLGPSQDLKLYRTWETDSSYMVIENAGEHVDNSSSITYALANESPVAPLLVYETARTMSSDTEVLEKRFNISWKFEVDPNFDYLVRLHFCEL
  VVDKQNQRIFRIYINNQTAAGNFDIYAHAGGKNKAIYQDYFDPVSSKNDVLWIQLG
Full Sequence
Protein Sequence     Length: 854     Download
MLKQRKKFME LVLCLLIIFT FVVGYGEAQS KSFLVDCGSN TSTKADGRIW VGDLSPNNSL    60
SLSSSGLDAT SPTPLKSSAF AEIYKSARVF TTTLNYSFYE IPQGSYFVRL HFSPFPMETH    120
NVNESSFSVY ANGLRLMLDI NIQGEIAHKN LILLSSGHNA TASSLVKEFL LPIGPEKLVL    180
SFIPEKESFG FVNAIEVVSV DDKLFKDSVT KVGGSEVELG LGGGRGVETM YRLNVGGPKL    240
GPSQDLKLYR TWETDSSYMV IENAGEHVDN SSSITYALAN ESPVAPLLVY ETARTMSSDT    300
EVLEKRFNIS WKFEVDPNFD YLVRLHFCEL VVDKQNQRIF RIYINNQTAA GNFDIYAHAG    360
GKNKAIYQDY FDPVSSKNDV LWIQLGPDTS AGASGTDALL SGLEIFKLSK NGNLAHLMRF    420
DSSGHSVDNS RMRIIWISVG AGVATIILLA FLVTMVVCLC KMRRNKSDDD SKNNPPGWRP    480
LFLHVNNSTT NAKAAGGSLR LNTLAASTLG RKFTLAEIRA ATKNFDDGLA IGVGGFGKVY    540
RGELEDGTVI AIKRATPHSQ QGLAEFETEI VMLSRLRHRH LVSLIGFCDE HNEMILVYEY    600
MANGTLRSHL FGSNLPPLSW KQRLEACIGS ARGLHYLHTG SERGIIHRDV KTTNILLDEN    660
FVAKMSDFGL SKAGPSMDHT HVSTAVKGSF GYLDPEYFRR QQLTEKSDVY SFGVVLFEAV    720
CARAVINPTL PKDQINLAEW ALSWQKQRSL ESIIDPNLRG NYSPESLEKY GEIAEKCLAD    780
EGKNRPMMGE VLWHLEYVLQ LHEAWLRKQN GENSFSSSQA LEEAPESSLQ ACSNQDSSEA    840
EKSQTGSTLH NMV* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd00180PKc5.0e-41531726200+
cd00192PTKc3.0e-41531796281+
smart00219TyrKc8.0e-42531718197+
smart00221STYKc4.0e-42531718197+
pfam12819Malectin_like5.0e-5235408385+
Gene Ontology
GO TermDescription
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCBI31024.10138486839unnamed protein product [Vitis vinifera]
RefSeqNP_174345.1018511847protein kinase family protein [Arabidopsis thaliana]
RefSeqXP_002264211.101384851884PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002299052.1048235813predicted protein [Populus trichocarpa]
RefSeqXP_002523186.10128479840kinase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2qkw_B051280428319A Chain A, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto
PDB3hgk_D051280428319E Chain E, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto
PDB3hgk_C051280428319E Chain E, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto
PDB3hgk_B051280428319E Chain E, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto
PDB3hgk_A051280428319E Chain E, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto
Transmembrane Domains
StartEnd
726
434456
Signal Peptide
Cleavage Site
24
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
ES8051853424567910
GH2709232555908440
ES7930812395858230
EX0535732055887920
EX3576022575357910
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_026_00352.1
Citrus clementinaCiclev10014250m
Citrus sinensisorange1.1g047215m
Eucalyptus grandisEucgr.K01945.1
Fragaria vescamrna28878.1-v1.0-hybrid
Malus domesticaMDP0000843097
Manihot esculentacassava4.1_030005m
Panicum virgatumPavirv00014838m
Populus trichocarpaPotri.011G164700.1Potri.001G467000.1
Setaria italicaSi028931m
Vitis viniferaGSVIVT01021662001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny