| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma09g26905.1 |
| Family | GH28 |
| Protein Properties | Length: 207 Molecular Weight: 23077 Isoelectric Point: 6.9295 |
| Chromosome | Chromosome/Scaffold: 09 Start: 33534161 End: 33535816 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 4 | 122 | 2e-35 |
| DGKTIAPTSSAAWGSSTLQWLNNITISGKGVIDGQGTVWWNNDSPTYNPTKALRFYGSDGVTITDITIQNSQQTHLKFDSCTNVQVSGISVSSPAPNTDG IHLQNSQNVVIYSSTLACG | |||
| Full Sequence |
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| Protein Sequence Length: 207 Download |
| MQWDGKTIAP TSSAAWGSST LQWLNNITIS GKGVIDGQGT VWWNNDSPTY NPTKALRFYG 60 SDGVTITDIT IQNSQQTHLK FDSCTNVQVS GISVSSPAPN TDGIHLQNSQ NVVIYSSTLA 120 CGLRLSDAPN VEKREMGLLS TLLKWIEVDP PSRDEKLRNE RICKFYQHNR NPFVDHPEYA 180 NLIWKQPIFL KTVSLIGWTG YEVLYV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-15 | 1 | 122 | 130 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-16 | 23 | 122 | 107 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 6.0e-19 | 24 | 122 | 109 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-22 | 1 | 122 | 136 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-24 | 2 | 122 | 127 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004518 | nuclease activity |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD46483.1 | 0 | 1 | 122 | 106 | 249 | polygalacturonase PG1 [Glycine max] |
| GenBank | AAD46484.1 | 0 | 1 | 122 | 102 | 245 | polygalacturonase PG2 [Glycine max] |
| GenBank | ACU24545.1 | 0 | 1 | 122 | 106 | 249 | unknown [Glycine max] |
| DDBJ | BAH56488.1 | 6.02558e-44 | 1 | 122 | 161 | 314 | polygalacturonase 1 [Prunus persica] |
| RefSeq | NP_196969.1 | 7.00649e-44 | 1 | 122 | 111 | 242 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FK016540 | 129 | 1 | 107 | 0 |
| GE344029 | 120 | 1 | 111 | 5.60519e-45 |
| BI784578 | 106 | 38 | 124 | 5.04467e-44 |
| BI784577 | 106 | 38 | 124 | 5.04467e-44 |
| CX659600 | 144 | 1 | 122 | 1.99965e-42 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brassica rapa | Bra014620 | ||||
| Glycine max | Glyma16g22488.1 | ||||
| Populus trichocarpa | Potri.001G108000.1 | ||||
| Prunus persica | ppb019654m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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