PlantCAZyme

Basic Information
Species	Glycine max
Cazyme ID	Glyma16g22488.1
Family	GH28
Protein Properties	Length: 481 Molecular Weight: 53957.5 Isoelectric Point: 4.9069
Chromosome	Chromosome/Scaffold: 16 Start: 25974090 End: 25978329
Description	Pectin lyase-like superfamily protein
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH28	291	414	6.5e-34
DTPDFDLSLNNITIRGKGVIDGQGSVWWNNDSPTYNPTEVMLESKGRLPSTKPTLKALRFYGSDGVTVTCITIQNSQQTHLKFDSCTNVQVSGISVSSPG DSPNTDGIHLQNSQNVVIYSSTLA

Full Sequence
Protein Sequence Length: 481 Download
MHYLVVVLAL NRVSLFGLGL GLARCGKSCR LRWLNYLRPN LKIGNYTEEE EETIIKLHRH 60 LAKILKVILA KEELSLDVDL DAVASMTDGY SRSDLKVPGF LFPVTLFFEI KVTIIQYLML 120 ALILQNLCIT AVDRPIKEIL EKEKKVSTEW PGFPLGVKFD PSDVELLECL AAKCGIGNTQ 180 QHMFINEFIP TLEGDQGICY THPKNLPDIQ DQDFPGNAAW LAGESRAEEN TKYDGCDDVL 240 LCKEILDSSA ILNDPGLDST NLEDIADYAT QRARNDHESW GISILDSLEL DTPDFDLSLN 300 NITIRGKGVI DGQGSVWWNN DSPTYNPTEV MLESKGRLPS TKPTLKALRF YGSDGVTVTC 360 ITIQNSQQTH LKFDSCTNVQ VSGISVSSPG DSPNTDGIHL QNSQNVVIYS STLACEKREI 420 ELLSTLLKSN EVDPPSRDEK LRNERIYKFY QHNRNPFVDH PKYAILIWKQ PVFHQLTNIV 480 *

Full Sequence

Protein Sequence Length: 481 Download

MHYLVVVLAL NRVSLFGLGL GLARCGKSCR LRWLNYLRPN LKIGNYTEEE EETIIKLHRH    60
LAKILKVILA KEELSLDVDL DAVASMTDGY SRSDLKVPGF LFPVTLFFEI KVTIIQYLML    120
ALILQNLCIT AVDRPIKEIL EKEKKVSTEW PGFPLGVKFD PSDVELLECL AAKCGIGNTQ    180
QHMFINEFIP TLEGDQGICY THPKNLPDIQ DQDFPGNAAW LAGESRAEEN TKYDGCDDVL    240
LCKEILDSSA ILNDPGLDST NLEDIADYAT QRARNDHESW GISILDSLEL DTPDFDLSLN    300
NITIRGKGVI DGQGSVWWNN DSPTYNPTEV MLESKGRLPS TKPTLKALRF YGSDGVTVTC    360
ITIQNSQQTH LKFDSCTNVQ VSGISVSSPG DSPNTDGIHL QNSQNVVIYS STLACEKREI    420
ELLSTLLKSN EVDPPSRDEK LRNERIYKFY QHNRNPFVDH PKYAILIWKQ PVFHQLTNIV    480
* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN03091	PLN03091	6.0e-13	10	58	57	+ hypothetical protein; Provisional
PLN02188	PLN02188	2.0e-14	299	414	117	+ polygalacturonase/glycoside hydrolase family protein
PLN02793	PLN02793	1.0e-16	299	413	115	+ Probable polygalacturonase
PLN02218	PLN02218	5.0e-20	299	413	118	+ polygalacturonase ADPG
pfam00295	Glyco_hydro_28	7.0e-24	298	412	115	+ Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.

Gene Ontology
GO Term	Description
GO:0004518	nuclease activity
GO:0004650	polygalacturonase activity
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	AAD46483.1	0	273	415	114	248	polygalacturonase PG1 [Glycine max]
GenBank	AAD46484.1	0	273	415	110	244	polygalacturonase PG2 [Glycine max]
GenBank	AAO24262.1	1.99965e-42	280	422	159	295	putative style polygalacturonase [Turnera subulata]
GenBank	ACU24545.1	0	273	415	114	248	unknown [Glycine max]
DDBJ	BAH56488.1	9.94922e-44	280	415	176	313	polygalacturonase 1 [Prunus persica]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1msf_C	0.00007	23	73	36	90	A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase
PDB	1mse_C	0.00007	23	73	36	90	C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices
PDB	1gv2_A	0.00008	23	62	36	75	A Chain A, Crystal Structure Of C-Myb R2r3
PDB	1h8a_C	0.0001	23	62	59	98	C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3

Signal Peptide

Cleavage Site
23

EST Download unfiltered results here

Hit	Length	Start	End	EValue
FG992538	97	208	304	0
FG992538	66	146	211	0
BI784578	106	313	418	0
BI784577	106	313	418	0
FG992538	22	124	145	1.9

Orthologous Group
Species	ID
Brassica rapa	Bra014620
Glycine max	Glyma09g26905.1
Populus trichocarpa	Potri.001G108000.1
Prunus persica	ppb019654m

CAZyme Information