| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os05g22800.1 |
| Family | PL1 |
| Protein Properties | Length: 374 Molecular Weight: 39970 Isoelectric Point: 6.4269 |
| Chromosome | Chromosome/Scaffold: 5 Start: 12933093 End: 12938368 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 110 | 296 | 0 |
| VFAGDMTISPAHELVVSSRKTVDGRGARVVVGDGGACFAVRGASDVVIHGLTIRRCRPAPKLEAGMSDGDGVHNSSDVWVDHCTVEACADGLIDVVVGST RVTLSNNLLRNHDKAILLGHNDDYTDDKAMQVTVAFNRFGPGLVQRMPRCRFGLFHVINNDYIAWQKYAIGGSASPTIISHGNRFYA | |||
| Full Sequence |
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| Protein Sequence Length: 374 Download |
| MAAIFIFIWL FASVLSISSA SSPLLINGST ADAAPDCGTG NPIDDCWRCD PGWADNRQRL 60 ADCAVGFGRR AVGGKGGRVY VVNDTGDDAA RPAPGTLRYG LVQDEPLWIV FAGDMTISPA 120 HELVVSSRKT VDGRGARVVV GDGGACFAVR GASDVVIHGL TIRRCRPAPK LEAGMSDGDG 180 VHNSSDVWVD HCTVEACADG LIDVVVGSTR VTLSNNLLRN HDKAILLGHN DDYTDDKAMQ 240 VTVAFNRFGP GLVQRMPRCR FGLFHVINND YIAWQKYAIG GSASPTIISH GNRFYADMAK 300 EVTKRDDDVP ESVWHHWNWV SDGDLMLNGA FFRASGEART DNLKAPSFAR SAPSVPSMTS 360 SAGALSCKEG SHC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-24 | 147 | 294 | 159 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-53 | 148 | 294 | 160 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-56 | 114 | 294 | 194 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0005623 | cell |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV32549.1 | 0 | 37 | 373 | 61 | 413 | pectase lyase [Prunus persica] |
| DDBJ | BAE48664.1 | 0 | 37 | 373 | 61 | 413 | Pectate lyase [Prunus mume] |
| DDBJ | BAF43572.1 | 0 | 37 | 373 | 61 | 413 | pectate lyase [Prunus persica] |
| GenBank | EAY97390.1 | 0 | 23 | 302 | 23 | 302 | hypothetical protein OsI_19315 [Oryza sativa Indica Group] |
| RefSeq | NP_001055106.1 | 0 | 23 | 373 | 23 | 373 | Os05g0293500 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 41 | 366 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 41 | 366 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 9e-20 | 60 | 285 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.000000000000001 | 122 | 361 | 75 | 341 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1jta_A | 0.00000000000008 | 122 | 294 | 82 | 287 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 16 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778688 | 356 | 37 | 374 | 0 |
| FG606120 | 324 | 37 | 344 | 0 |
| FL903996 | 218 | 159 | 366 | 0 |
| HO785222 | 207 | 175 | 374 | 0 |
| HO785222 | 136 | 37 | 171 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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