| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si025309m |
| Family | PL1 |
| Protein Properties | Length: 346 Molecular Weight: 36920.3 Isoelectric Point: 5.7805 |
| Chromosome | Chromosome/Scaffold: 3 Start: 39251672 End: 39253390 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 80 | 268 | 0 |
| ITFARDMTIRPKHDLLVGSHKTVDGRGAAVVVGDGGACLVIHNASHVIVHGITVRGCKPARTASGGMSDGDGITVFRATDVWVDHCTLEKCTDGLIDVTD ASTRVTLSNNLLRNHDKAVLLGHSDDFTDDKDMKVTVAFNRFGPGLVQRMPRCRFGLFHVINNDYISWQIYAIGGSASPTILSHGNRFL | |||
| Full Sequence |
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| Protein Sequence Length: 346 Download |
| MLDGDCGTGN PVDDCWRCDP SWADNRQRLA DCAVGFGRDA GGGKNGRNYV VTDPGDADDP 60 SDPAPGTLRY GLVQEGPLWI TFARDMTIRP KHDLLVGSHK TVDGRGAAVV VGDGGACLVI 120 HNASHVIVHG ITVRGCKPAR TASGGMSDGD GITVFRATDV WVDHCTLEKC TDGLIDVTDA 180 STRVTLSNNL LRNHDKAVLL GHSDDFTDDK DMKVTVAFNR FGPGLVQRMP RCRFGLFHVI 240 NNDYISWQIY AIGGSASPTI LSHGNRFLAG EAKEVTKRDG RTAESEWSTW TWISEGDMLL 300 NGAFFRSSGS PGPDVNTPSF AKSVSLVSAM TDSVGVLSCK EGSLC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-25 | 118 | 324 | 222 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-56 | 118 | 267 | 161 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-60 | 85 | 270 | 197 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF19195.1 | 0 | 6 | 345 | 55 | 407 | AF206319_1 pectate lyase 1 [Musa acuminata AAA Group] |
| EMBL | CAA63496.1 | 0 | 6 | 345 | 45 | 398 | pectate lyase [Musa acuminata AAA Group] |
| GenBank | EAY97390.1 | 0 | 5 | 275 | 36 | 302 | hypothetical protein OsI_19315 [Oryza sativa Indica Group] |
| RefSeq | NP_001055106.1 | 0 | 5 | 345 | 36 | 373 | Os05g0293500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002441767.1 | 0 | 4 | 345 | 11 | 309 | hypothetical protein SORBIDRAFT_08g002030 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 10 | 309 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 10 | 309 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 7e-24 | 75 | 268 | 45 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 9e-16 | 83 | 244 | 140 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 3krg_A | 0.000000000000002 | 83 | 244 | 119 | 295 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL903996 | 217 | 130 | 338 | 0 |
| HO778688 | 357 | 6 | 346 | 0 |
| FG606120 | 330 | 6 | 322 | 0 |
| DY278910 | 285 | 6 | 277 | 0 |
| HO785222 | 207 | 146 | 346 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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