| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10011237 |
| Family | GH35 |
| Protein Properties | Length: 898 Molecular Weight: 100600 Isoelectric Point: 6.5793 |
| Chromosome | Chromosome/Scaffold: 1376 Start: 316674 End: 321779 |
| Description | beta-galactosidase 8 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 35 | 320 | 0 |
| VIDGKRRVLLSGSVHYPRATPEMWPEIIRRSKEGGLDVIETYVFWNYHEPVRGQYYFEDRFDLVRFVKAVQEAGLLVHLRIGPYACAEWNYGGFPMWLHF LPGIQFRTDNAIFKNEMERFLAKIVNLMKEEQLFASQGGPIILAQVSQAVTISIFSVAGFVNQYITSVVVWQVENEYGNVQASYGEAGDLYVQWAAKTAV SLNTTVPWVMCAQQDAPDPVINTCNGFYCDGFTPNSPSKPKMWTENYSGWFLSFGYPIPYRPVEDLAFSVARFFEYGGTFQNYYMA | |||
| Full Sequence |
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| Protein Sequence Length: 898 Download |
| MNRFGIVVLW VLVCGCSWFE EGLCSTVSYD HRAIVIDGKR RVLLSGSVHY PRATPEMWPE 60 IIRRSKEGGL DVIETYVFWN YHEPVRGQYY FEDRFDLVRF VKAVQEAGLL VHLRIGPYAC 120 AEWNYGGFPM WLHFLPGIQF RTDNAIFKNE MERFLAKIVN LMKEEQLFAS QGGPIILAQV 180 SQAVTISIFS VAGFVNQYIT SVVVWQVENE YGNVQASYGE AGDLYVQWAA KTAVSLNTTV 240 PWVMCAQQDA PDPVINTCNG FYCDGFTPNS PSKPKMWTEN YSGWFLSFGY PIPYRPVEDL 300 AFSVARFFEY GGTFQNYYMA SAFSILAIDT LLELEQLFTT WILLLLNYDM HFQYFGGTNF 360 GRTAGGPLIA TSYDYDAPLD EYGYIRQPKW GHLRDLHKVI KLCEEHLISS DPVHQSLGHN 420 LEAHIYYKSP NTSCAAFLAN FDSKSDAKVK FEGNEYFLPA WSVSILPDCK NVVFNTAKVV 480 SQRHPVGNSF TRSTTTPNEV SLATSGSAWS WYQEQVGIWG NDSFTKSGLL EQINTTKDKS 540 LGYGNHDDEK FSITQKITLA EGKNTLDILS MMIGLQNYGP MFDVQGAGID SVVLAEFKNG 600 NRDISSGKWT YQVGLKGEEI GLHEVRLANS SYWDRGSSLP VAKSLIWYKT TFLAPQGKGP 660 LVLNLGSMGK GQAWVNGKGI GRYWPAYLSP PNGCIENCDY RGSHDSSTCQ RNCGQPTQTL 720 YHVPRAWVRS GENLLVLHEE LGGDPSKISV LTQTDQETVC SMISEDDPPP PDTWKPNAEL 780 IASRSAEVRL SCEEGSHIST INFASIGDPK GHCGSFARGD CHVDVLPFVR KLPITTESHS 840 SLRRRFIVIS GRTGDFSLCV SLSSSVAPDS RFYSSIQGFA KQRRRTRRFE RQGIQGR* 900 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 0.0007 | 49 | 132 | 85 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| COG1874 | LacA | 3.0e-18 | 27 | 213 | 194 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 3.0e-142 | 33 | 400 | 383 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 6 | 822 | 852 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK24373.1 | 0 | 1 | 840 | 4 | 835 | unknown [Picea sitchensis] |
| DDBJ | BAD20774.2 | 0 | 26 | 821 | 32 | 805 | beta-galactosidase [Raphanus sativus] |
| EMBL | CBI16297.1 | 0 | 1 | 840 | 1 | 820 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002317239.1 | 0 | 16 | 840 | 25 | 822 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521428.1 | 0 | 2 | 840 | 5 | 814 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 2e-31 | 26 | 396 | 7 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.005 | 647 | 753 | 510 | 586 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 1e-28 | 27 | 412 | 11 | 347 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 1e-28 | 27 | 412 | 11 | 347 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Signal Peptide | |||||
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| Cleavage Site | |||||
| 24 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778160 | 781 | 21 | 754 | 0 |
| HO780602 | 784 | 77 | 806 | 0 |
| DW076707 | 372 | 27 | 398 | 0 |
| HO795552 | 586 | 117 | 667 | 0 |
| HO795552 | 73 | 6 | 78 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brassica rapa | Bra003128 | Bra003353 | Bra021198 | ||
| Linum usitatissimum | Lus10036109 | Lus10000271 | |||
| Malus domestica | MDP0000127542.34.225 | MDP0000127542.34.225 | |||
| Panicum virgatum | Pavirv00000761m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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