| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr3g070740.1 |
| Family | PL1 |
| Protein Properties | Length: 329 Molecular Weight: 36929 Isoelectric Point: 8.5417 |
| Chromosome | Chromosome/Scaffold: 3 Start: 22405590 End: 22407329 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 121 | 256 | 0 |
| TTFLHCHRVRKERSDGDGITIYGAAHIWVDHCSLSNCFDGFIDVVHGSTAVTISNNYMTRHNKVMLFGHSDSYEEDKNMQATIAFNHFGEGLGGRMPRCR FGYFHVVNNDYTHWQQYAIGGSSSRTIFSQGNRFLA | |||
| Full Sequence |
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| Protein Sequence Length: 329 Download |
| MFSEQNILRV YCKFTGITSS SYNPLVGWMQ GALILKILFE LPLFVPKLAL CRKEVLEFDI 60 YHNSKHTLGN IIPLNNNNHL NSSSPLRNHY FSRRKKIYIS PSPSIMISTI WNWVVIIIIP 120 TTFLHCHRVR KERSDGDGIT IYGAAHIWVD HCSLSNCFDG FIDVVHGSTA VTISNNYMTR 180 HNKVMLFGHS DSYEEDKNMQ ATIAFNHFGE GLGGRMPRCR FGYFHVVNND YTHWQQYAIG 240 GSSSRTIFSQ GNRFLAPDDD DHRVGELDWR SEGDLILNGA YFTPSGAGAS SSTYAKASSM 300 SARPPMLVAS MTAGAGVLRC KKGYQCYD* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02952 | PLN02952 | 2.0e-7 | 2 | 32 | 31 | + phosphoinositide phospholipase C | ||
| COG3866 | PelB | 7.0e-25 | 116 | 282 | 181 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-56 | 134 | 254 | 129 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-61 | 116 | 258 | 152 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_189376.1 | 0 | 133 | 326 | 208 | 412 | pectate lyase family protein [Arabidopsis thaliana] |
| Swiss-Prot | P24396 | 0 | 134 | 326 | 199 | 404 | PEL18_SOLLC RecName: Full=Probable pectate lyase P18; AltName: Full=Style development-specific protein 9612; Flags: Precursor |
| Swiss-Prot | Q9LTZ0 | 0 | 133 | 326 | 205 | 409 | PEL11_ARATH RecName: Full=Putative pectate lyase 11; Flags: Precursor |
| RefSeq | XP_002300069.1 | 0 | 134 | 326 | 200 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526952.1 | 0 | 133 | 326 | 192 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 135 | 318 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 135 | 318 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_B | 9e-16 | 132 | 316 | 134 | 357 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_A | 9e-16 | 132 | 316 | 134 | 357 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1ooc_B | 9e-16 | 132 | 316 | 134 | 357 | A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A |
| Transmembrane Domains | ||||
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| Start | End | |||
| 97 | 119 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX076424 | 208 | 131 | 326 | 0 |
| GO956932 | 205 | 134 | 326 | 0 |
| GR121035 | 205 | 134 | 326 | 0 |
| EH739110 | 205 | 134 | 326 | 0 |
| EY093194 | 205 | 134 | 326 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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