| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00025012m |
| Family | GH17 |
| Protein Properties | Length: 371 Molecular Weight: 40569.8 Isoelectric Point: 5.9516 |
| Chromosome | Chromosome/Scaffold: 0359778 Start: 80 End: 1192 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH17 | 7 | 325 | 0 |
| IGACYGRNADDLPAPDKVAQLIQQQSIKYVRIYDTNIDVIKAFANTGVELMVGVPNSDLLAFAQYQSNVDTWLKNSILPYYPATMITYITVGAEVTESTV NASALVVPAMRNVHTALKKAGLHKKITISSTHSLGILSRSFPPSAGAFNSSYAYFLKPMLEFLVENQAPFMVDLYPYYAYQNSHSNVSLNYALFSPQSQD VIDPNTGLVYSNMFDAQVDSIFFALMALNFKTLKIMVTESGWPNKGAAKETGATPDNAQTYNTNLIRHVVNDSGTPAKPGEEIDVYIFSLFNENRKPGIG SERNWGLFFPDKSSIYSLD | |||
| Full Sequence |
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| Protein Sequence Length: 371 Download |
| HCQGGKIGAC YGRNADDLPA PDKVAQLIQQ QSIKYVRIYD TNIDVIKAFA NTGVELMVGV 60 PNSDLLAFAQ YQSNVDTWLK NSILPYYPAT MITYITVGAE VTESTVNASA LVVPAMRNVH 120 TALKKAGLHK KITISSTHSL GILSRSFPPS AGAFNSSYAY FLKPMLEFLV ENQAPFMVDL 180 YPYYAYQNSH SNVSLNYALF SPQSQDVIDP NTGLVYSNMF DAQVDSIFFA LMALNFKTLK 240 IMVTESGWPN KGAAKETGAT PDNAQTYNTN LIRHVVNDSG TPAKPGEEID VYIFSLFNEN 300 RKPGIGSERN WGLFFPDKSS IYSLDWTGRG KVDVMTGANI TNANGTWCIA SANASETDLQ 360 NALNWACGPG N |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0008 | 241 | 318 | 81 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 0.0002 | 346 | 370 | 25 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-6 | 346 | 370 | 25 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 7.0e-109 | 7 | 325 | 319 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28065.1 | 0 | 1 | 371 | 20 | 390 | unknown [Zea mays] |
| GenBank | EAZ13481.1 | 0 | 1 | 371 | 17 | 387 | hypothetical protein OsJ_03397 [Oryza sativa Japonica Group] |
| RefSeq | NP_001044198.1 | 0 | 1 | 371 | 17 | 387 | Os01g0739700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001144992.1 | 0 | 1 | 371 | 20 | 390 | hypothetical protein LOC100278152 [Zea mays] |
| RefSeq | XP_002456331.1 | 0 | 1 | 371 | 21 | 391 | hypothetical protein SORBIDRAFT_03g034100 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 7 | 326 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 7 | 326 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 7 | 326 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 7 | 326 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 7 | 326 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EB663214 | 265 | 91 | 355 | 0 |
| CO446305 | 278 | 60 | 337 | 0 |
| JG830892 | 238 | 120 | 357 | 0 |
| DN216501 | 243 | 96 | 338 | 0 |
| EX264975 | 283 | 2 | 284 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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