PlantCAZyme

Basic Information
Species	Physcomitrella patens
Cazyme ID	Pp1s130_275V6.1
Family	GH103
Protein Properties	Length: 531 Molecular Weight: 58704 Isoelectric Point: 6.5238
Chromosome	Chromosome/Scaffold: 130 Start: 1041771 End: 1044543
Description
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH103	212	517	0
FKEWVKDVRSDAQSQGVSEEVLDWALENIELSKESLVHTESMPEVKLTLDDYLKRMVDEKRVKIGAELMKENVELLTEVSQKFGVPTQFLVAIWGIETNY GSYMGNWDIIQSLATMSFTEKPASRSNYFRGELIEALLMLQKGTADRGRGPEGKTRLRGSWAGAMGQCQFMPTSFRDYALDYDGDGHKDIWESKADVFAS IANYFKEHGWKEGGPIFQKVQVPRKLDESLVGLGVVKSVLDWEHKHGVHLNPGKAPPLPPDEMASLLMPNGPKGNAYLVCSNFRVILRYNSSSLYGFSVC ELARLI

Full Sequence
Protein Sequence Length: 531 Download
MALFSLSSAL LSPYHGSVAE LKEPSALKIL YPYQFPSLGR FRRGGIALPA FGGLGWRSVA 60 EQTIESVHLH SHRCFSFPEK DSNSTTELQG PEFALEDECT DGAMSSGRKM IMLFLSKSVI 120 IGVLAFTMAA VAAASRNRRT GLVAEPADSG QVYVLNGKPV VSISNKFNEA EPRISSREKL 180 SRSLCFASTA LTANDGLTKL QEKAIDEAMQ KFKEWVKDVR SDAQSQGVSE EVLDWALENI 240 ELSKESLVHT ESMPEVKLTL DDYLKRMVDE KRVKIGAELM KENVELLTEV SQKFGVPTQF 300 LVAIWGIETN YGSYMGNWDI IQSLATMSFT EKPASRSNYF RGELIEALLM LQKGTADRGR 360 GPEGKTRLRG SWAGAMGQCQ FMPTSFRDYA LDYDGDGHKD IWESKADVFA SIANYFKEHG 420 WKEGGPIFQK VQVPRKLDES LVGLGVVKSV LDWEHKHGVH LNPGKAPPLP PDEMASLLMP 480 NGPKGNAYLV CSNFRVILRY NSSSLYGFSV CELARLIEER SSNPYPTPAL * 540

Full Sequence

Protein Sequence Length: 531 Download

MALFSLSSAL LSPYHGSVAE LKEPSALKIL YPYQFPSLGR FRRGGIALPA FGGLGWRSVA    60
EQTIESVHLH SHRCFSFPEK DSNSTTELQG PEFALEDECT DGAMSSGRKM IMLFLSKSVI    120
IGVLAFTMAA VAAASRNRRT GLVAEPADSG QVYVLNGKPV VSISNKFNEA EPRISSREKL    180
SRSLCFASTA LTANDGLTKL QEKAIDEAMQ KFKEWVKDVR SDAQSQGVSE EVLDWALENI    240
ELSKESLVHT ESMPEVKLTL DDYLKRMVDE KRVKIGAELM KENVELLTEV SQKFGVPTQF    300
LVAIWGIETN YGSYMGNWDI IQSLATMSFT EKPASRSNYF RGELIEALLM LQKGTADRGR    360
GPEGKTRLRG SWAGAMGQCQ FMPTSFRDYA LDYDGDGHKD IWESKADVFA SIANYFKEHG    420
WKEGGPIFQK VQVPRKLDES LVGLGVVKSV LDWEHKHGVH LNPGKAPPLP PDEMASLLMP    480
NGPKGNAYLV CSNFRVILRY NSSSLYGFSV CELARLIEER SSNPYPTPAL *             540

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PRK10760	PRK10760	6.0e-41	263	514	277	+ murein hydrolase B; Provisional
TIGR02282	MltB	4.0e-63	223	514	298	+ lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].
COG2951	MltB	1.0e-90	176	517	343	+ Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
TIGR02283	MltB_2	4.0e-100	212	514	304	+ lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282 [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].
pfam13406	SLT_2	2.0e-126	212	515	304	+ Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
EMBL	CAM76692.1	0	201	517	27	327	Membrane-bound lytic murein transglycosylase B [Magnetospirillum gryphiswaldense MSR-1]
RefSeq	NP_797255.1	0	212	517	24	321	putative lytic murein transglycosylase [Vibrio parahaemolyticus RIMD 2210633]
RefSeq	XP_001770826.1	0	1	530	1	530	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	ZP_01043740.1	0	210	517	43	339	Membrane-bound lytic murein transglycosylase [Idiomarina baltica OS145]
RefSeq	ZP_01312886.1	0	211	520	41	340	Lytic murein transglycosylase [Desulfuromonas acetoxidans DSM 684]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	4anr_A	4.99983e-42	244	514	53	313	A Chain A, Crystal Structure Of Soluble Lytic Transglycosylase Sltb1 From Pseudomonas Aeruginosa
PDB	1ltm_A	5e-34	263	517	76	314	A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda Muramidase/transglycosylase Using W
PDB	1qut_A	6e-34	263	517	78	316	A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda Muramidase/transglycosylase Using W
PDB	1qus_A	6e-34	263	517	78	316	A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic Transglycosylase Slt35 From Escherichia Coli
PDB	1qdt_A	6e-34	263	517	78	316	A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic Transglycosylase Slt35 From Escherichia Coli

Transmembrane Domains

Start	End
113	135

EST Download unfiltered results here

Hit	Length	Start	End	EValue
BY946922	251	13	263	0
BJ604140	216	316	531	0
BY949902	205	13	217	0
BY957613	199	13	211	0
BY949902	28	212	239	0.005

Orthologous Group
Species	ID
Picea abies	MA_158979g0180	MA_158949g0090	MA_8970700g0010	MA_159111g0190	MA_158524g0080
	MA_159125g0190	MA_10434630g0010
Ricinus communis	28809.m000040
Selaginella moellendorffii	410831

CAZyme Information