Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10013983m |
Family | GH33 |
Protein Properties | Length: 350 Molecular Weight: 38708.9 Isoelectric Point: 5.663 |
Chromosome | Chromosome/Scaffold: 2 Start: 9143200 End: 9145423 |
Description | BNR/Asp-box repeat family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH33 | 9 | 311 | 3.8e-32 |
VVLETFTFPADSAPFKSCHASTIVEVGKDHFLTAYFGGTFEGASDVKIWLQHFKDGQWQSPVIVDEELGVPMWNPVLFKLPSQELLLFYKIGQEVQKWSG CMKRSYDKGRTWTNREQLPPGILGPIKNKPILLEDGTLLCGSSVESWNSWGAWMEVTSDAGRSWKKQGPIYIQGMSLSVIQPVPYQTAAGKLRVLLRSFT GIDRICISESSDGGENWSFATPTVLPNPNSGIDGVKLKDGRLVLTYNTDSRGVLKVGVSLDDGDSWTDVLTLEESPGMEFSYPAVIQADDGNVHVTYTYN RTQ |
Full Sequence |
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Protein Sequence Length: 350 Download |
MMSETEFKVV LETFTFPADS APFKSCHAST IVEVGKDHFL TAYFGGTFEG ASDVKIWLQH 60 FKDGQWQSPV IVDEELGVPM WNPVLFKLPS QELLLFYKIG QEVQKWSGCM KRSYDKGRTW 120 TNREQLPPGI LGPIKNKPIL LEDGTLLCGS SVESWNSWGA WMEVTSDAGR SWKKQGPIYI 180 QGMSLSVIQP VPYQTAAGKL RVLLRSFTGI DRICISESSD GGENWSFATP TVLPNPNSGI 240 DGVKLKDGRL VLTYNTDSRG VLKVGVSLDD GDSWTDVLTL EESPGMEFSY PAVIQADDGN 300 VHVTYTYNRT QIKHVVLKTA TDIDSKPYRK HGEAGGRHVG FGLYEPSLS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00260 | Sialidase | 0.0006 | 106 | 284 | 202 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
cd00260 | Sialidase | 0.0002 | 110 | 322 | 246 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
COG4692 | COG4692 | 5.0e-29 | 22 | 320 | 357 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
pfam13088 | BNR_2 | 1.0e-98 | 37 | 303 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61202.1 | 0 | 2 | 349 | 1 | 347 | unknown [Arabidopsis thaliana] |
RefSeq | NP_001078763.1 | 0 | 2 | 349 | 12 | 358 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
RefSeq | NP_001154784.1 | 0 | 1 | 349 | 1 | 348 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
RefSeq | NP_568864.2 | 0 | 2 | 349 | 1 | 347 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
RefSeq | NP_851204.1 | 0 | 2 | 349 | 6 | 352 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES962106 | 261 | 31 | 291 | 0 |
DK493056 | 244 | 2 | 245 | 0 |
EV057257 | 236 | 2 | 237 | 0 |
DK513241 | 232 | 2 | 233 | 0 |
EV550034 | 233 | 6 | 238 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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