| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g020796m |
| Family | GH33 |
| Protein Properties | Length: 322 Molecular Weight: 35673.9 Isoelectric Point: 8.0471 |
| Chromosome | Chromosome/Scaffold: 00048 Start: 581565 End: 584878 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH33 | 17 | 311 | 3.9e-30 |
| FPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYN KGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCM SESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYNRT | |||
| Full Sequence |
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| Protein Sequence Length: 322 Download |
| MKKDCGIKGL VAEEFTFPAN SAPFKSCHAS TIVEVDKGHF LVAYFGGSCE GAPDVKIWLQ 60 TFKDGRWQSP IIADEEPNVP MWNPVLFKLP SNGLLLFYKI GQEVQKWSGC MKRSYNKGVT 120 WSEREQLPPG ILGPSKNKPI LLENGLLLCG SSVESWNSWG SWMEVTVDAG RSWRKYGPIY 180 IPNESLSVIQ PVPFHTANRT LRVLMRSFNG IGRVCMSESC DGGLTWSYAK PTQLLNPNSG 240 IDGVKLKDGR LLLAYNTVSR GVLKVALSKD DGDSWHDALT LEENLAMEFS YPAVIQASDG 300 SVHITYTYNR TQIKHVVLLP N* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.009 | 71 | 277 | 242 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 2.0e-26 | 23 | 320 | 350 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 3.0e-93 | 38 | 304 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18568.1 | 0 | 1 | 321 | 34 | 354 | unknown [Glycine max] |
| RefSeq | NP_851204.1 | 0 | 10 | 318 | 13 | 321 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263578.1 | 0 | 4 | 321 | 52 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324495.1 | 0 | 1 | 321 | 1 | 321 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002531744.1 | 0 | 1 | 321 | 1 | 321 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4j9t_A | 0.002 | 71 | 230 | 143 | 315 | A Chain A, Crystal Structure Of A Putative, De Novo Designed Unnatural Amino Acid Dependent Metalloprotein, Northeast Structural Genomics Consortium Target Or61 |
| PDB | 2ber_A | 0.005 | 71 | 255 | 143 | 339 | A Chain A, Y370g Active Site Mutant Of The Sialidase From Micromonospora Viridifaciens In Complex With Beta-Neu5ac (Sialic Acid) |
| PDB | 1euu_A | 0.01 | 71 | 230 | 147 | 319 | A Chain A, Y370g Active Site Mutant Of The Sialidase From Micromonospora Viridifaciens In Complex With Beta-Neu5ac (Sialic Acid) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DV137355 | 268 | 40 | 307 | 0 |
| EL689016 | 287 | 19 | 305 | 0 |
| DV145816 | 255 | 37 | 291 | 0 |
| CV274814 | 246 | 75 | 320 | 0 |
| EY114510 | 255 | 13 | 267 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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