| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g047946m |
| Family | GH28 |
| Protein Properties | Length: 322 Molecular Weight: 35053 Isoelectric Point: 6.3446 |
| Chromosome | Chromosome/Scaffold: 00079 Start: 515405 End: 516959 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 178 | 307 | 2.2e-30 |
| SSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSMP NIEIGNRNLVYNGVNVKVEGPETTSLCSNV | |||
| Full Sequence |
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| Protein Sequence Length: 322 Download |
| LLLAARFSLL VSFITSVRGI DATNRVLNVK DFGAVADGIT DDSKAFDTSW REAWNWDGIK 60 GTVLVPPGKY LVSFAEFEGP CKASISFQLQ GLLDLFSIDT SLSLAKGTFH GQGETAWPLN 120 QCHKNSDCQL PTPIRFNFLN DSTITGIKSV DSRYFHINIL GCYNLKLNDL KITAHADSSK 180 DILVSEVFCG PGQGISVGSL GKGIKDEEVV GLTVRNCTFT CTSNGVRVKT WPDSHIGIAS 240 NFTFEDIVMN NVENPIVIDQ LYCPYNKCNI KPKDSMPNIE IGNRNLVYNG VNVKVEGPET 300 TSLCSNVKPT LFGKQIPATC V* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-38 | 1 | 263 | 332 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-39 | 10 | 268 | 314 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 6.0e-48 | 4 | 267 | 312 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-49 | 57 | 308 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-73 | 28 | 320 | 367 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABY21306.1 | 0 | 17 | 318 | 1 | 374 | pollen allergen Pla o 2 [Platanus orientalis] |
| Swiss-Prot | Q6H9K0 | 0 | 18 | 318 | 1 | 373 | PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor |
| RefSeq | XP_002274125.1 | 0 | 26 | 321 | 27 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282573.1 | 0 | 26 | 320 | 27 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282594.1 | 0 | 26 | 320 | 27 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 0.00001 | 61 | 307 | 46 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1ib4_A | 0.00001 | 61 | 307 | 46 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1ia5_A | 0.00001 | 61 | 307 | 46 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1bhe_A | 0.00002 | 190 | 270 | 248 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.00003 | 61 | 262 | 42 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Signal Peptide | |||||
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| Cleavage Site | |||||
| 19 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CO101156 | 283 | 32 | 264 | 0 |
| CO101142 | 283 | 32 | 264 | 0 |
| CU617067 | 301 | 9 | 260 | 0 |
| CO114621 | 285 | 29 | 263 | 0 |
| EG525413 | 299 | 18 | 265 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Glycine max | Glyma14g23621.1 | ||||
| Malus domestica | MDP0000284808 | ||||
| Populus trichocarpa | Potri.012G013600.1 | ||||
| Prunus persica | ppa012438m | ppa026186m | |||
| Vitis vinifera | GSVIVT01020328001 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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