1.1 Guilt-by-Association (Tabular View)
| Loci ID |
Classification |
Organism |
Refseq ID |
Protein ID |
Start |
End |
Strand |
aa Length |
Charge |
Isoelectric Point |
Acr/Aca |
PaCRISPR_score |
AcRanker Rank |
AcRanker Score |
AcRanker Rank Prophage | AcRanker Score Prophage | MGE/Propahge Metadata |
Acr_Hit |
sequence |
Self Target w/in 5000 BP |
Self Target Outside 5000 BP |
lineage(Kingdom;Phylum;Class;Order;Family;Genus;Species;SubSpecies) |
| Acr-Aca 1 | Medium Confidence | Escherichia albertii | NZ_CP025317.1 | WP_000187185.1 | 1217800 | 1218048 | + | 83 | 5 | 10.4254 | WP_127528961.1|HTH_3|AcrIIA15|35.9|0.00034 | 0.105179807 | 1870 | -5.063475 | Not found in Prophage | Not found in Prophage | PHAGE_Aggreg_S1249_NC_013597-gi|100049|ref|YP_003344829.1||2.33e-07 | - | MTPEQLALSEAIALAGGQSELARKLTASSGHLVKQQHVWNWLNREKRPPAKLSIFIEKTTGISKEKLRPDIFQKIKDSSDEK | No | | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia albertii |
| Acr-Aca 1 | Medium Confidence | Escherichia albertii | NZ_CP025317.1 | WP_103053488.1 | 1218071 | 1218622 | + | 184 | -6.5 | 4.7675 | Acr | 0.128734592 | 188 | -2.965552 | 23 | -2.965552 | PHAGE_Shigel_SfII_NC_021857-gi|526244673|ref|YP_008318517.1||1.73e-134 | - | MGKHHWKVEKQPKWYVKAVRKTIAALPGGYAEAADWLDVTENALFNRLRADGDQIFPLGWAMILQRAGGTHFIADAVAQSANGVFVSLPDVEDVDNADINQRLLEVIEQIGSYSKQIRSAIEDGVVEPHEKTAINDELYLSISKLQEHAALVYKIFCVSESSDARECAAPGAVACRDCGETNA | No | | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia albertii |
| Acr-Aca 2 | High Confidence | Escherichia albertii | NZ_CP025317.1 | WP_002461634.1 | 2471478 | 2471822 | + | 115 | 3.5 | 9.9986 | WP_092544900.1|HTH_XRE|AcrIIA1|55.2|0.0058 | 0.308416467 | 2180 | -5.217023 | Not found in Prophage | Not found in Prophage | - | - | MTPEELAKLTGYSRQTINKWVRKEGWATSPKPGVQGGKARLVHINEQVREYIRNAERPEGQGESPALSGDAPLEVLLVTLAKEMTPAEQKQFTSLLLREGIIGLLQRLGIRDNK | | No | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia albertii |
| Acr-Aca 2 | High Confidence | Escherichia albertii | NZ_CP025317.1 | WP_000826487.1 | 2471824 | 2472216 | + | 131 | 3 | 8.5133 | ERS795896|NODE_320_length_707_cov_0.874138_1|HTH_XRE|AcrIIA15|50.0|0.0047 | 0.288701942 | 1808 | -5.026527 | Not found in Prophage | Not found in Prophage | - | - | MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILIDTQVCAFIQNTPAFHNTPMLLEAEEPLAEYAPGIRTPAYRQIISAIDNMTHVEQEKVAQFLSREGIRNFLSRLDIDESV | | No | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia albertii |
| Acr-Aca 3 | Medium Confidence | Escherichia albertii | NZ_CP025317.1 | WP_001327757.1 | 4619448 | 4619654 | + | 69 | 12.5 | 12.5073 | Acr | 0.126629257 | 1260 | -4.6653886 | Not found in Prophage | Not found in Prophage | - | - | MRVRKHRFATITRHTGTAQPPQSPRLSPDGHIPDYFLRFSPVVMPGKVVRCFHHQRRLRLTTSGGTFS | No | | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia albertii |
| Acr-Aca 3 | Medium Confidence | Escherichia albertii | NZ_CP025317.1 | WP_077759065.1 | 4619597 | 4619857 | + | 87 | 3 | 10.3534 | AcrIIA13-0-WP_006662529.1|HTH_17|74.2|8.7e-26 | 0.147983505 | 1648 | -4.9344234 | Not found in Prophage | Not found in Prophage | PHAGE_Erwini_phiEt88_NC_015295-gi|327198591|ref|YP_004327335.1||3.21e-09 | - | MFSSPTPVEINNIRRNIFMNTPVSLMDDQMVDMAFITQLTGLTDKWFYKLIKDGAFPAPIKLGRSSRWLKSEVETWLQARIAQSRP | No | | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia albertii |
1.2 Guilt-by-Association (Graphic View)
Download
SVG
PNG
1.3 Guilt-by-Association (Jbrowse View)