PlantCAZyme

Basic Information
Species	Ricinus communis
Cazyme ID	35354.m000021
Family	GH30
Protein Properties	Length: 450 Molecular Weight: 48998.5 Isoelectric Point: 10.5125
Chromosome	Chromosome/Scaffold: 35354 Start: 78 End: 1576
Description
View CDS

External Links
NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH30	5	331	0
QGDPQLKHFSIDPQKATVLPTVKAALAINPHLKVIASPWSAPGWMKTSDSLVKGTLKPEAFDAFARYLGRYVAAMRDQGVTISALTLQNEPHFEPDNYPG MRVDPHKRAAFIRDHLGPLLARSHPGTAIFDWDHNWDEPESPAVVLSDPRAAKYVSGVAWHCYGGDVRAQGRLHDLFPAKDTWFTECSGGRWAPDWAKNL QYFAKTLVIDTTRNWARGVLFWNLALDAHDGPHLGGCNDCRGVVTIDAATGAVTRNVEYYALAHASRFVLPGAHRIASTGENNVAFVNPDGSYALLVANG DAQPRALAVRVGTQAFRYTLPASSVAT

Full Sequence
Protein Sequence Length: 450 Download
MPPGQGDPQL KHFSIDPQKA TVLPTVKAAL AINPHLKVIA SPWSAPGWMK TSDSLVKGTL 60 KPEAFDAFAR YLGRYVAAMR DQGVTISALT LQNEPHFEPD NYPGMRVDPH KRAAFIRDHL 120 GPLLARSHPG TAIFDWDHNW DEPESPAVVL SDPRAAKYVS GVAWHCYGGD VRAQGRLHDL 180 FPAKDTWFTE CSGGRWAPDW AKNLQYFAKT LVIDTTRNWA RGVLFWNLAL DAHDGPHLGG 240 CNDCRGVVTI DAATGAVTRN VEYYALAHAS RFVLPGAHRI ASTGENNVAF VNPDGSYALL 300 VANGDAQPRA LAVRVGTQAF RYTLPASSVA TQPPPLAVCL GPKTPPTGET SVNHQGRSPP 360 GRGRPGHRIA RRARQGIGVA GQAGTRAEGH RRTRLPAVAR GALPVVRHVA HDRRVHPPVV 420 RHLLHVDPAD HRHGTARRRH AHDGGVRRQP

Full Sequence

Protein Sequence Length: 450 Download

MPPGQGDPQL KHFSIDPQKA TVLPTVKAAL AINPHLKVIA SPWSAPGWMK TSDSLVKGTL    60
KPEAFDAFAR YLGRYVAAMR DQGVTISALT LQNEPHFEPD NYPGMRVDPH KRAAFIRDHL    120
GPLLARSHPG TAIFDWDHNW DEPESPAVVL SDPRAAKYVS GVAWHCYGGD VRAQGRLHDL    180
FPAKDTWFTE CSGGRWAPDW AKNLQYFAKT LVIDTTRNWA RGVLFWNLAL DAHDGPHLGG    240
CNDCRGVVTI DAATGAVTRN VEYYALAHAS RFVLPGAHRI ASTGENNVAF VNPDGSYALL    300
VANGDAQPRA LAVRVGTQAF RYTLPASSVA TQPPPLAVCL GPKTPPTGET SVNHQGRSPP    360
GRGRPGHRIA RRARQGIGVA GQAGTRAEGH RRTRLPAVAR GALPVVRHVA HDRRVHPPVV    420
RHLLHVDPAD HRHGTARRRH AHDGGVRRQP 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
pfam02055	Glyco_hydro_30	8.0e-39	7	331	358	+ O-Glycosyl hydrolase family 30.
COG5520	COG5520	4.0e-77	4	331	347	+ O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]

Gene Ontology
GO Term	Description
GO:0004348	glucosylceramidase activity
GO:0005764	lysosome
GO:0006665	sphingolipid metabolic process
GO:0007040	lysosome organization

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
RefSeq	NP_420565.1	0	2	331	133	466	glycosy hydrolase family protein [Caulobacter crescentus CB15]
RefSeq	XP_002536668.1	0	1	450	1	450	glucosylceramidase, putative [Ricinus communis]
RefSeq	YP_003009243.1	0	1	331	141	476	Glucan endo-1,6-beta-glucosidase [Paenibacillus sp. JDR-2]
RefSeq	YP_522378.1	0	4	331	149	481	glycoside hydrolase family protein [Rhodoferax ferrireducens T118]
RefSeq	ZP_05034823.1	0	7	331	137	464	O-Glycosyl hydrolase family 30 [Brevundimonas sp. BAL3]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	2wnw_B	5e-39	7	331	108	439	A Chain A, The Crystal Structure Of Srfj From Salmonella Typhimurium
PDB	2wnw_A	5e-39	7	331	108	439	A Chain A, The Crystal Structure Of Srfj From Salmonella Typhimurium
PDB	3keh_B	8e-25	7	331	141	491	A Chain A, The Crystal Structure Of Srfj From Salmonella Typhimurium
PDB	3keh_A	8e-25	7	331	141	491	A Chain A, The Crystal Structure Of Srfj From Salmonella Typhimurium
PDB	3ke0_B	8e-25	7	331	141	491	A Chain A, Crystal Structure Of N370s Glucocerebrosidase At Acidic Ph.

EST Download unfiltered results here

Hit	Length	Start	End	EValue
GT036898	236	7	240	0
HO662719	257	115	351	1e-25
EX865274	172	167	325	2e-22
HO653148	166	7	167	4e-18
GT036898	40	235	272	0.95

Orthologous Group
Species	ID
Ricinus communis	32430.m000014

CAZyme Information