PlantCAZyme

Basic Information
Species	Citrus clementina
Cazyme ID	Ciclev10030302m
Family	GH28
Protein Properties	Length: 359 Molecular Weight: 38537.8 Isoelectric Point: 8.0132
Chromosome	Chromosome/Scaffold: 8 Start: 18984154 End: 18985747
Description	Pectin lyase-like superfamily protein
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH28	59	279	0
NWDGIESTVLVTPGKYLSNFVELEGPCKAPISFQLQGLVQAPTGLSKLPDKQSWITFQYLRHFTLSGEGTFHGQGETAWPLNQCHKNSDCQLPTSMRFNF LNDSTITGIKSVGSKYFHINILGCYNLKINDLKITAHADSPNTNGIHIGRSNGIEISHSVIATGDDCVCLGQGSKNILVSDVFFGPGHGISVGRLGKDTK DEEVVGLTVRNCTFTGTSNGV

Full Sequence
Protein Sequence Length: 359 Download
MGFSSYSQQA FSLLVLFITS VKGIDATNRV FNVKDFGAAA DGIKDDSKAF GTAWREACNW 60 DGIESTVLVT PGKYLSNFVE LEGPCKAPIS FQLQGLVQAP TGLSKLPDKQ SWITFQYLRH 120 FTLSGEGTFH GQGETAWPLN QCHKNSDCQL PTSMRFNFLN DSTITGIKSV GSKYFHINIL 180 GCYNLKINDL KITAHADSPN TNGIHIGRSN GIEISHSVIA TGDDCVCLGQ GSKNILVSDV 240 FFGPGHGISV GRLGKDTKDE EVVGLTVRNC TFTGTSNGVP SQVKISNVRF NNIRGTSATK 300 VAVSLVCSQK IPCQNIEIGN INLVYNGVNV KVEGPETTSL CSNVKPTLFG KQIPATCV* 360

Full Sequence

Protein Sequence Length: 359 Download

MGFSSYSQQA FSLLVLFITS VKGIDATNRV FNVKDFGAAA DGIKDDSKAF GTAWREACNW    60
DGIESTVLVT PGKYLSNFVE LEGPCKAPIS FQLQGLVQAP TGLSKLPDKQ SWITFQYLRH    120
FTLSGEGTFH GQGETAWPLN QCHKNSDCQL PTSMRFNFLN DSTITGIKSV GSKYFHINIL    180
GCYNLKINDL KITAHADSPN TNGIHIGRSN GIEISHSVIA TGDDCVCLGQ GSKNILVSDV    240
FFGPGHGISV GRLGKDTKDE EVVGLTVRNC TFTGTSNGVP SQVKISNVRF NNIRGTSATK    300
VAVSLVCSQK IPCQNIEIGN INLVYNGVNV KVEGPETTSL CSNVKPTLFG KQIPATCV*     360

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN02793	PLN02793	4.0e-58	29	331	357	+ Probable polygalacturonase
PLN02218	PLN02218	2.0e-59	17	323	357	+ polygalacturonase ADPG
PLN02155	PLN02155	3.0e-67	11	358	396	+ polygalacturonase
pfam00295	Glyco_hydro_28	9.0e-74	65	345	326	+ Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.
PLN02188	PLN02188	1.0e-102	31	357	375	+ polygalacturonase/glycoside hydrolase family protein

Gene Ontology
GO Term	Description
GO:0004650	polygalacturonase activity
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
RefSeq	XP_002273801.1	0	1	358	1	396	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002274125.1	0	30	357	27	394	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002282563.1	0	30	357	27	394	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002282573.1	0	30	357	27	394	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002282594.1	0	30	357	27	394	PREDICTED: hypothetical protein [Vitis vinifera]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1rmg_A	0.000001	29	323	19	338	A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
PDB	1ib4_B	0.000001	159	344	112	333	A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
PDB	1ib4_A	0.000001	159	344	112	333	A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
PDB	1ia5_A	0.000001	159	344	112	333	A Chain A, Polygalacturonase From Aspergillus Aculeatus
PDB	1nhc_F	0.00001	122	294	73	250	A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger

Signal Peptide

Cleavage Site
26

EST Download unfiltered results here

Hit	Length	Start	End	EValue
EC987202	250	31	279	0
EC941822	250	31	279	0
CO126362	286	11	294	0
CO103979	275	6	278	0
CO119975	271	11	279	0

Orthologous Group
Species	ID
Citrus sinensis	orange1.1g042417m

CAZyme Information