| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g042417m |
| Family | GH28 |
| Protein Properties | Length: 250 Molecular Weight: 26825.3 Isoelectric Point: 7.3366 |
| Chromosome | Chromosome/Scaffold: 00079 Start: 487551 End: 489884 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 46 | 154 | 1.9e-30 |
| LSIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTV RNCTFTGTN | |||
| Full Sequence |
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| Protein Sequence Length: 250 Download |
| VFNVKDFGAV ADGIKDDSKA FETAWREACN WDGIKSAVLV PPGKYLSIRF NFLNDSTITG 60 IKSVDSRYFH INILGCYNLK LNDLKITAHA DSPNTEGIHI GSSNGSEISH SVIATGDDCV 120 SLGHGISVGS LGKGINDEEV VGLTVRNCTF TGTNIVTNNV ENPIVIDQLY CPYNKCNIKV 180 PSQVKTSNVR FNNIRGTSAN KIPCQNIGIG NINWVYNGVN VKVEGPETTS LCSNVKPTLF 240 GKQIPATCV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 0.0006 | 1 | 46 | 46 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-8 | 2 | 50 | 51 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-36 | 31 | 249 | 268 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-46 | 31 | 236 | 250 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-57 | 47 | 248 | 252 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002269648.1 | 0 | 46 | 249 | 117 | 364 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
| RefSeq | XP_002274125.1 | 0 | 46 | 249 | 148 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282573.1 | 0 | 46 | 248 | 148 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 0.001 | 53 | 201 | 112 | 261 | A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a |
| PDB | 1ib4_A | 0.001 | 53 | 201 | 112 | 261 | A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a |
| PDB | 1ia5_A | 0.001 | 53 | 201 | 112 | 261 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1bhe_A | 0.002 | 48 | 178 | 154 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.009 | 53 | 235 | 108 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT741125 | 250 | 46 | 248 | 0 |
| GR453460 | 253 | 46 | 248 | 0 |
| GR454433 | 253 | 46 | 248 | 0 |
| GR460755 | 253 | 46 | 248 | 0 |
| GR452025 | 253 | 46 | 248 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Citrus clementina | Ciclev10030302m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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