| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma11g11220.1 |
| Family | CBM22 |
| Protein Properties | Length: 567 Molecular Weight: 64021.9 Isoelectric Point: 6.0101 |
| Chromosome | Chromosome/Scaffold: 11 Start: 7975139 End: 7977850 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| CBM22 | 35 | 152 | 6.2e-22 |
| IIQNPELNNELQGWTAFGDAKIEHRESLGNKYAVVHSRNQARDSVSQKIYLQKDKHYTLSAWIQVKGSEGNVPVTAVVKTTTRLKFAGAIFAESNCWSML KGGLTSDESGPAELYFEG | |||
| GH10 | 211 | 472 | 0 |
| QKRPGFPFGSSMSSSILNNKLYQDWFTSRFTVTTFGNEMKWYSTENVQGKEDYSVADAMLQFAKQHNIAVRGHNIFWDDPHFQPSWVPSLSPPQLNSAVE KRVRSVVSRYRGQLIAWDVVNENLHFSFFEDKLGQAFSGRIFNEAHNIDGQTTLFLNEYNTIEDSRDGVSSPAKYIQKLKQIQSYPGNAGLPIGIGLEAH FPAQGINFPYLRASIDNLAATRLPIWITELDVASQPKQSQYFELALRELHGHPMVRGLVMWT | |||
| Full Sequence |
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| Protein Sequence Length: 567 Download |
| MLLTTGFEVE ALSYDYSASI ECLAHPLKPL YNGGIIQNPE LNNELQGWTA FGDAKIEHRE 60 SLGNKYAVVH SRNQARDSVS QKIYLQKDKH YTLSAWIQVK GSEGNVPVTA VVKTTTRLKF 120 AGAIFAESNC WSMLKGGLTS DESGPAELYF EGNDTSAEIW IDNVSLQPFT EEEWRSHQDE 180 SIERARKRKV LVQAVDEEGN PLPNATISFV QKRPGFPFGS SMSSSILNNK LYQDWFTSRF 240 TVTTFGNEMK WYSTENVQGK EDYSVADAML QFAKQHNIAV RGHNIFWDDP HFQPSWVPSL 300 SPPQLNSAVE KRVRSVVSRY RGQLIAWDVV NENLHFSFFE DKLGQAFSGR IFNEAHNIDG 360 QTTLFLNEYN TIEDSRDGVS SPAKYIQKLK QIQSYPGNAG LPIGIGLEAH FPAQGINFPY 420 LRASIDNLAA TRLPIWITEL DVASQPKQSQ YFELALRELH GHPMVRGLVM WTGPSPEGCY 480 RICLVDNNFR NLPAGKVVDK LLSEWRLSKL SGMTDQNGFF EANLFHGDYE IEVSHPVMKN 540 YTFTQRLQVT PTDDSKETKQ FVQLSM* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-5 | 45 | 156 | 122 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 6.0e-34 | 240 | 442 | 216 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-54 | 216 | 471 | 277 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 8.0e-74 | 249 | 498 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN10199.1 | 0 | 2 | 559 | 20 | 578 | endoxylanase [Carica papaya] |
| RefSeq | XP_002264556.1 | 0 | 10 | 565 | 108 | 657 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264652.1 | 0 | 6 | 555 | 23 | 570 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313180.1 | 0 | 20 | 535 | 1 | 512 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532418.1 | 0 | 6 | 563 | 15 | 568 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ta3_B | 1e-28 | 218 | 503 | 17 | 303 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1tux_A | 8e-26 | 209 | 502 | 9 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1nq6_A | 2e-25 | 218 | 498 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1gor_A | 4e-22 | 209 | 494 | 9 | 293 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1goq_A | 4e-22 | 209 | 494 | 9 | 293 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX266128 | 274 | 232 | 505 | 0 |
| BI312030 | 245 | 323 | 567 | 0 |
| BI310394 | 231 | 337 | 567 | 0 |
| BI310247 | 216 | 1 | 216 | 0 |
| EX266128 | 29 | 510 | 536 | 0.022 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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