| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s261_56V6.1 |
| Family | CE8 |
| Protein Properties | Length: 175 Molecular Weight: 19740.3 Isoelectric Point: 9.9318 |
| Chromosome | Chromosome/Scaffold: 261 Start: 577689 End: 578637 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 24 | 149 | 1.99993e-41 |
| NERVVIPKSKWHITLQGSGREVTKITSKNAAGDTGTTYTTSTFRVSAPYFTARNISFENSSPRPSGEAQPQAVALRTTGDFNAFYGCAFYGQQGTLYDDR GRYYFKDTLIVGSVDFTFGDGKSLYK | |||
| Full Sequence |
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| Protein Sequence Length: 175 Download |
| MHTSPSRKLA KRCHFTTETP SLSNERVVIP KSKWHITLQG SGREVTKITS KNAAGDTGTT 60 YTTSTFRVSA PYFTARNISF ENSSPRPSGE AQPQAVALRT TGDFNAFYGC AFYGQQGTLY 120 DDRGRYYFKD TLIVGSVDFT FGDGKSLYKL RHFTILVIQL VVYCWIYESW RRPF* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01095 | Pectinesterase | 4.0e-30 | 24 | 144 | 121 | + Pectinesterase. | ||
| PLN02665 | PLN02665 | 5.0e-34 | 24 | 148 | 126 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 2.0e-34 | 25 | 149 | 132 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 5.0e-37 | 25 | 152 | 135 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 3.0e-37 | 25 | 149 | 126 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB71446.1 | 2e-33 | 25 | 160 | 128 | 264 | Similar to Prunus pectinesterase (gb |
| RefSeq | XP_001760885.1 | 6.00036e-42 | 20 | 149 | 9 | 139 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001764301.1 | 0 | 19 | 156 | 30 | 167 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001769271.1 | 0 | 24 | 156 | 114 | 246 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001779614.1 | 0 | 15 | 174 | 56 | 215 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 7e-19 | 25 | 149 | 48 | 168 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0.000000000002 | 25 | 149 | 44 | 164 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.00000000004 | 25 | 148 | 72 | 212 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2nt9_B | 0.0000000001 | 24 | 149 | 45 | 186 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2nt9_A | 0.0000000001 | 24 | 149 | 45 | 186 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| BY991561 | 126 | 24 | 149 | 0 |
| BY952611 | 133 | 24 | 156 | 0 |
| BY945516 | 118 | 24 | 141 | 0 |
| BJ977375 | 138 | 19 | 156 | 0 |
| BJ968522 | 116 | 24 | 139 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Arabidopsis lyrata | 870009.32.214 | 870009.32.214 | |||
| Medicago truncatula | Medtr7g102580.1 | ||||
| Mimulus guttatus | mgv1a024611m | ||||
| Picea abies | MA_272638g0010 | MA_32575g0010 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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