| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna28152.1-v1.0-hybrid |
| Family | CBM22 |
| Protein Properties | Length: 586 Molecular Weight: 65248.4 Isoelectric Point: 6.6285 |
| Chromosome | Chromosome/Scaffold: 3 Start: 20403697 End: 20405454 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM22 | 50 | 168 | 6.7e-21 |
| IIVNPELNHGLRGWSTFGNAKLQHRESQAGNKFAVACNRNQPHAGISQKTYLQGNKLYTFSAWIQVSGGRGVPVTAIFKTSSGSFIHAGAIVAESNCWSM MKGGLTVNASGPAELYFES | |||
| GH10 | 228 | 491 | 0 |
| KAPSFPFGCAMNKNILANTAYQNWFTSRFGVTTFENEMKWYSTENSQGKEDYSVADAMLQFAKQHNIAVRGHNVFWDDPQYQLGWVTSLDKHQLALAAFK RLYSVMNRYKGQVIAWDVVNENLHFDFFESKWGKNSSAILYNWATKADGETTLFMNEFNTIEESEDGDSTPAKYLQKLRDIQAFPGNNNLKMAIGLESHF RSPNIPYIRSSIDTLAAANLPIWITELDVQSGPNQAWYLEQIMREVYTHPKIQGIIIWAAWRPE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 586 Download |
| MTTGGKSNLL LLLLCTFLFP RFEVNALSYD YSASIECLEN PHKPQYGGGI IVNPELNHGL 60 RGWSTFGNAK LQHRESQAGN KFAVACNRNQ PHAGISQKTY LQGNKLYTFS AWIQVSGGRG 120 VPVTAIFKTS SGSFIHAGAI VAESNCWSMM KGGLTVNASG PAELYFESKN TSVDIWVDSV 180 SLQPFTEKEW KSHHDQSIEK NRKSNVRIQA VDAEGNPLRN ATISIQQKAP SFPFGCAMNK 240 NILANTAYQN WFTSRFGVTT FENEMKWYST ENSQGKEDYS VADAMLQFAK QHNIAVRGHN 300 VFWDDPQYQL GWVTSLDKHQ LALAAFKRLY SVMNRYKGQV IAWDVVNENL HFDFFESKWG 360 KNSSAILYNW ATKADGETTL FMNEFNTIEE SEDGDSTPAK YLQKLRDIQA FPGNNNLKMA 420 IGLESHFRSP NIPYIRSSID TLAAANLPIW ITELDVQSGP NQAWYLEQIM REVYTHPKIQ 480 GIIIWAAWRP EGCYRMCLTD NNFKNLPTGD VVDKLLSEWG LKAGFASSAT TDTNGVFEAS 540 LPHGDYEVQI TDLESVKVSN AMVQGLNVAA SSSASQQPLL VQLAA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.004 | 57 | 172 | 123 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-30 | 256 | 456 | 213 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-50 | 229 | 504 | 302 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-69 | 265 | 512 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 5e-26 | 234 | 512 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 3e-25 | 234 | 516 | 18 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1ta3_B | 3e-23 | 234 | 489 | 17 | 277 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1i1x_A | 7e-23 | 234 | 518 | 18 | 303 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1i1w_A | 7e-23 | 234 | 518 | 18 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
