| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 28599.m000063 |
| Family | GH23 |
| Protein Properties | Length: 291 Molecular Weight: 32226.5 Isoelectric Point: 8.8479 |
| Chromosome | Chromosome/Scaffold: 28599 Start: 7410 End: 8285 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH23 | 165 | 275 | 5e-34 |
| DFAMAVIAVESGFNPKATSRKKAQGLMQLLPDTQARFHVKDAYDPEQNIKGGLSYLRWLITYFKGDVELVAAAYNAGENAVQRHQGIPPYPETRDYVKRI AHYYKKKHHEV | |||
| Full Sequence |
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| Protein Sequence Length: 291 Download |
| MGESPVAEVG QAADSEPVAS YSREQSTLKN DAYKQFIKLQ VSLAAGTKNS LGLSSYEQAH 60 AHYCALAGES RDPDAQFAMG WLYSMGKGVE VNHDIAARFF SLAAIQGHRD AREWLDKEPG 120 NAELAVLPAC MHKQGNSAAE VLFRKRGPIY QLVKKHAPVY GVDVDFAMAV IAVESGFNPK 180 ATSRKKAQGL MQLLPDTQAR FHVKDAYDPE QNIKGGLSYL RWLITYFKGD VELVAAAYNA 240 GENAVQRHQG IPPYPETRDY VKRIAHYYKK KHHEVKQRSA MQQAEMIPAA S 300 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4623 | COG4623 | 3.0e-13 | 107 | 285 | 224 | + Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] | ||
| PRK11619 | PRK11619 | 2.0e-15 | 161 | 267 | 132 | + lytic murein transglycosylase; Provisional | ||
| COG0741 | MltE | 8.0e-24 | 136 | 279 | 169 | + Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane] | ||
| pfam01464 | SLT | 8.0e-26 | 160 | 247 | 94 | + Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. | ||
| cd00254 | LT_GEWL | 1.0e-30 | 164 | 269 | 113 | + Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_842228.1 | 0 | 53 | 273 | 57 | 280 | SLT domain-containing protein [Nitrosomonas europaea ATCC 19718] |
| RefSeq | XP_002534862.1 | 0 | 1 | 291 | 1 | 291 | lytic transglycosylase, putative [Ricinus communis] |
| RefSeq | YP_003168471.1 | 0 | 63 | 286 | 69 | 294 | Lytic transglycosylase catalytic [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] |
| RefSeq | YP_285646.1 | 0 | 57 | 273 | 64 | 278 | lytic transglycosylase, catalytic [Dechloromonas aromatica RCB] |
| RefSeq | YP_746880.1 | 0 | 63 | 273 | 67 | 280 | lytic transglycosylase, catalytic [Nitrosomonas eutropha C91] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1qte_A | 0.0000000003 | 152 | 267 | 456 | 594 | A Chain A, Bacterial Heroin Esterase |
| PDB | 1qsa_A | 0.0000000003 | 152 | 267 | 456 | 594 | A Chain A, Crystal Structure Of The 70 Kda Soluble Lytic Transglycosylase Slt70 From Escherichia Coli At 1.65 Angstroms Resolution |
| PDB | 1sly_A | 0.0000000005 | 152 | 267 | 456 | 594 | A Chain A, Complex Of The 70-Kda Soluble Lytic Transglycosylase With Bulgecin A |
| PDB | 4hjv_E | 0.0000005 | 148 | 225 | 41 | 126 | A Chain A, Complex Of The 70-Kda Soluble Lytic Transglycosylase With Bulgecin A |
| PDB | 4hjv_D | 0.0000005 | 148 | 225 | 41 | 126 | A Chain A, Complex Of The 70-Kda Soluble Lytic Transglycosylase With Bulgecin A |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO599648 | 89 | 148 | 225 | 0.0001 |
| EH222229 | 102 | 140 | 238 | 0.0002 |
| HO351281 | 76 | 161 | 225 | 0.0003 |
| HX174873 | 74 | 75 | 148 | 0.0003 |
| HX174873 | 60 | 48 | 107 | 1 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Picea abies | MA_158766g0100 | MA_158760g0070 | MA_159146g0030 | MA_159036g0330 | |
| Ricinus communis | 30333.m000034 | 30692.m000027 | 33357.m000019 | ||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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