| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 33357.m000019 |
| Family | GH23 |
| Protein Properties | Length: 254 Molecular Weight: 26864.2 Isoelectric Point: 9.768 |
| Chromosome | Chromosome/Scaffold: 33357 Start: 7 End: 770 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH23 | 138 | 245 | 7.8e-21 |
| LDPLLILAVMSIESGLNPFAESPMGAQGLMQVMSKVHHEKFQDMGGLQAALNPVANIRVGALILKDYVTKGGSVEAGLKSYVGAAAFETDDGYGSRVMAE YNRLKQVS | |||
| Full Sequence |
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| Protein Sequence Length: 254 Download |
| MASQPAAWFS TTRISAKGVL TTAQHTLTVV GVTALVVMAV LFVRPDLAKA LSDSLNRTPE 60 VETVAVTAPP LSALMDAPAA ATPAAAPAPL SAEEKALLGT QKQQQWVTTW LSKRYRVAGD 120 AANMLVSTAY LTAREIKLDP LLILAVMSIE SGLNPFAESP MGAQGLMQVM SKVHHEKFQD 180 MGGLQAALNP VANIRVGALI LKDYVTKGGS VEAGLKSYVG AAAFETDDGY GSRVMAEYNR 240 LKQVSAGKKC RPPR |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11619 | PRK11619 | 1.0e-5 | 147 | 205 | 67 | + lytic murein transglycosylase; Provisional | ||
| PRK11671 | mltC | 4.0e-6 | 133 | 170 | 38 | + murein transglycosylase C; Provisional | ||
| COG0741 | MltE | 1.0e-11 | 99 | 249 | 182 | + Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane] | ||
| cd00254 | LT_GEWL | 1.0e-13 | 140 | 239 | 113 | + Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. | ||
| pfam01464 | SLT | 5.0e-14 | 138 | 218 | 84 | + Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. | ||
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4hjv_E | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
| PDB | 4hjv_D | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
| PDB | 4hjv_C | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
| PDB | 4hjv_B | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
| PDB | 4hjv_A | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
| Transmembrane Domains | |||||
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| Start | End | ||||
| 21 | 43 | ||||
| Hydropathy |
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| Orthologous Group | |||||
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| Species | ID | ||||
| Picea abies | MA_158766g0100 | MA_158760g0070 | MA_159146g0030 | MA_159036g0330 | |
| Ricinus communis | 28599.m000063 | 30333.m000034 | 30692.m000027 | ||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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