| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma17g31721.1 |
| Family | GH28 |
| Protein Properties | Length: 258 Molecular Weight: 28119 Isoelectric Point: 8.6406 |
| Chromosome | Chromosome/Scaffold: 17 Start: 34928651 End: 34931843 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 53 | 248 | 0 |
| CGASNGTSTLVVPAGHTFFVRQTRFRGPCQSQKLDIQIMGNLLAPTKDAWKKCSGPWLYFLDVRGMTVHGSGVINGQGRDWWGKPYGTGACSHMPTALLF QRCDGLQISGLTHINGPGSHIFVVHSQDITISNIDIYSPLESHNTDGIDLTNSVRVNIRDSIIRTGDDCIAMKGGSKFININNVTCGPGHGIRYSS | |||
| Full Sequence |
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| Protein Sequence Length: 258 Download |
| MDLFKIGILI FSTVSCNLWV GHGQRFDVLN YGAKGNGRSD DTNAFVQAWK ALCGASNGTS 60 TLVVPAGHTF FVRQTRFRGP CQSQKLDIQI MGNLLAPTKD AWKKCSGPWL YFLDVRGMTV 120 HGSGVINGQG RDWWGKPYGT GACSHMPTAL LFQRCDGLQI SGLTHINGPG SHIFVVHSQD 180 ITISNIDIYS PLESHNTDGI DLTNSVRVNI RDSIIRTGDD CIAMKGGSKF ININNVTCGP 240 GHGIRYSSKC ELYKYSQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-45 | 26 | 248 | 227 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 8.0e-56 | 28 | 248 | 226 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-62 | 26 | 248 | 223 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 5.0e-64 | 26 | 248 | 228 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-64 | 22 | 248 | 229 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 3 | 248 | 4 | 256 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 26 | 248 | 23 | 244 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_195292.2 | 0 | 22 | 248 | 20 | 245 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 9 | 248 | 9 | 249 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 1 | 248 | 1 | 246 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.0000000004 | 24 | 227 | 26 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.0000000004 | 24 | 227 | 26 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.0000000004 | 24 | 227 | 26 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.0000000004 | 24 | 227 | 26 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1nhc_F | 0.000000001 | 60 | 248 | 24 | 203 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 23 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BI311148 | 247 | 1 | 244 | 0 |
| CX539150 | 203 | 40 | 240 | 0 |
| DY961682 | 231 | 26 | 248 | 0 |
| DY964976 | 227 | 26 | 244 | 0 |
| EH673898 | 224 | 26 | 241 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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