| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g047411m |
| Family | GH28 |
| Protein Properties | Length: 227 Molecular Weight: 24515.9 Isoelectric Point: 5.99 |
| Chromosome | Chromosome/Scaffold: 00396 Start: 30764 End: 33064 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 53 | 225 | 1.12104e-44 |
| TCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKL APTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 227 Download |
| MDADLCAILY FLYLISTASI RINADEFNVL DFGAAGDGNA DDSMAFIKAW NNTCSATAKS 60 PTMVIPKGKT FLVHPITFTG PCKSSDITIM LSGSIIAPNG PNEWKEDDKS KWFDIQSVDS 120 LQIDGSGTID GRGKAWWDIS CKINKKEGCV KLAPTVLKFD RCNNLRMNNM NFINSPQTHV 180 TVMGCIGVEF GFLSIQAPGT SPNTDGIHIQ ASSNVYIHNA HISNGT* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-32 | 54 | 225 | 172 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 1.0e-32 | 9 | 225 | 217 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-35 | 28 | 225 | 200 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 3.0e-40 | 22 | 225 | 204 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-48 | 27 | 225 | 199 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABM67700.1 | 0 | 29 | 225 | 57 | 250 | polygalacturonase [Citrus sinensis] |
| RefSeq | XP_002466242.1 | 0 | 27 | 225 | 75 | 270 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| RefSeq | XP_002515526.1 | 0 | 1 | 225 | 1 | 216 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| RefSeq | XP_002517618.1 | 0 | 26 | 225 | 10 | 202 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002517618.1 | 0.000000000003 | 154 | 225 | 470 | 541 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000002 | 123 | 225 | 113 | 222 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 0.00000008 | 26 | 225 | 27 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.00000008 | 26 | 225 | 27 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.00000008 | 26 | 225 | 27 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.00000008 | 26 | 225 | 27 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DT768233 | 222 | 5 | 225 | 0 |
| DT769247 | 222 | 5 | 225 | 0 |
| DT740193 | 222 | 5 | 225 | 0 |
| DT746125 | 222 | 5 | 225 | 0 |
| EH721029 | 199 | 27 | 225 | 5.99756e-43 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |