| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.011G082300.1 |
| Family | GH28 |
| Protein Properties | Length: 357 Molecular Weight: 38271.8 Isoelectric Point: 9.5183 |
| Chromosome | Chromosome/Scaffold: 11 Start: 8309053 End: 8311418 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 53 | 240 | 0 |
| CNAPARNPILSIPAAKIFLLKPVTFSGPCKSTSIHVLMSGNIVAPNSKMAWKGFHINRWLAFTHVNGLTIIGSGTINGRGAAWWSQPCLHKVPKGVTCKR PTALTFYRCNGLVLKGIRHINSQRNHITISNCKDVTFSNLHISAPKTSPNTDGIDISVVAGDDCIATSSDSSHINITGIACGPGHGIR | |||
| Full Sequence |
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| Protein Sequence Length: 357 Download |
| MELIFTVFIT ISYVLTPGAS GATSLFNVVH YGAVGDGKTD DSAVFSKAWK ATCNAPARNP 60 ILSIPAAKIF LLKPVTFSGP CKSTSIHVLM SGNIVAPNSK MAWKGFHINR WLAFTHVNGL 120 TIIGSGTING RGAAWWSQPC LHKVPKGVTC KRPTALTFYR CNGLVLKGIR HINSQRNHIT 180 ISNCKDVTFS NLHISAPKTS PNTDGIDISV VAGDDCIATS SDSSHINITG IACGPGHGIR 240 EALEMHGGSH SRKSGSFEPI APIIIDQYYC PSRVNCKNET SGIRISDVSY RSIIGTSTTD 300 KVINLSSVQN VGCTDIQFNY VYITPTDVPG KKAYAFSFNA HGNYTHTSPV VKRLQA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-52 | 3 | 316 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 9.0e-58 | 22 | 323 | 352 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 5.0e-65 | 23 | 349 | 377 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 5.0e-70 | 1 | 324 | 371 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 8.0e-81 | 25 | 342 | 366 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28723.1 | 0 | 23 | 354 | 13 | 390 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| EMBL | CBI36307.1 | 0 | 1 | 355 | 1 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002265133.1 | 0 | 26 | 354 | 10 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002266543.1 | 0 | 27 | 355 | 21 | 375 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002515526.1 | 0 | 11 | 354 | 15 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.00001 | 27 | 207 | 29 | 242 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.00001 | 27 | 207 | 29 | 242 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.00001 | 27 | 207 | 29 | 242 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.00001 | 27 | 207 | 29 | 242 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00005 | 122 | 247 | 113 | 261 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 21 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BE054235 | 185 | 1 | 185 | 0 |
| FG229693 | 209 | 1 | 209 | 0 |
| DY961682 | 253 | 8 | 248 | 0 |
| EH673898 | 256 | 1 | 236 | 0 |
| DY964976 | 244 | 8 | 239 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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