| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G207200.6 |
| Family | PL1 |
| Protein Properties | Length: 277 Molecular Weight: 30691.8 Isoelectric Point: 7.2492 |
| Chromosome | Chromosome/Scaffold: 10 Start: 57286219 End: 57288412 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 126 | 267 | 4.39999e-40 |
| VIQDEPLWIVFSTNMVIKLKHELIFNSFKTIDGRGVNVHITGNGCLTLQYVSHIIIHNIHVHHCKPSGNTDIASSPTHVGRRGRSDGDGISIFGSQKIWV DHCSLSYCTDGLVDAVMGSTGITISNSYFAHHDEVMLLGHDD | |||
| Full Sequence |
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| Protein Sequence Length: 277 Download |
| MLPFTCILFM CILASVSRAT FNLSLPHQHP HPESVVLDVQ WSLNASLSRR QTLSENTKDQ 60 CRTGNPIDDC WRCDPNWFNN RQRLADCSIG FARGTLGGKG GRIYTVTDSS DHDTVNPKPG 120 TLRHAVIQDE PLWIVFSTNM VIKLKHELIF NSFKTIDGRG VNVHITGNGC LTLQYVSHII 180 IHNIHVHHCK PSGNTDIASS PTHVGRRGRS DGDGISIFGS QKIWVDHCSL SYCTDGLVDA 240 VMGSTGITIS NSYFAHHDEV MLLGHDDRYI FPFPLA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-12 | 78 | 267 | 203 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-20 | 145 | 269 | 147 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-29 | 139 | 269 | 142 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_196051.2 | 0 | 6 | 269 | 18 | 299 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268818.1 | 0 | 1 | 269 | 1 | 276 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311060.1 | 0 | 6 | 271 | 7 | 283 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002316399.1 | 0 | 2 | 269 | 3 | 275 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534016.1 | 0 | 1 | 271 | 1 | 278 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 65 | 269 | 2 | 207 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 65 | 269 | 2 | 207 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0000000007 | 84 | 268 | 2 | 172 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.000001 | 143 | 267 | 71 | 205 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1jta_A | 0.0008 | 219 | 267 | 151 | 216 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 19 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT567984 | 270 | 1 | 270 | 0 |
| DT547705 | 204 | 1 | 204 | 0 |
| DT544280 | 199 | 1 | 199 | 0 |
| DT547704 | 200 | 1 | 200 | 0 |
| DT563756 | 199 | 1 | 199 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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