| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g017972m |
| Family | PL1 |
| Protein Properties | Length: 364 Molecular Weight: 40060.6 Isoelectric Point: 7.373 |
| Chromosome | Chromosome/Scaffold: 00107 Start: 424396 End: 427808 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 222 | 359 | 6.3e-37 |
| VIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWI DHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVCLY | |||
| Full Sequence |
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| Protein Sequence Length: 364 Download |
| MENGESIRGP FCWSTYQTDS AEDTHTHISS LSLSLSLLLF LSSFLFFLGC VWGVGKREKI 60 KENNAMAVTQ RGICLCFAVV LMLFVGVLAS VRNEQDVSVS RKMKAESSMN STMAAKAEVV 120 AEALSKHAVD NPDEIASMVE MSTRNSTERR KLGYFSCGTG NPIDDCWRCD GNWHKNRKRL 180 ADCGIGFGRN AIGGRDGRFY VVTDPRDDDP VNPKPGTLRH AVIQDKPLWI VFKRDMVIQL 240 KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIIHGL HVHDCKPTGN AMVRSSPTHY 300 GWRTVADGDA ISIFGSSHIW IDHNSLSHCA DGLVDAVMGS TAITISNNHM THHNEVCLYS 360 IFQ* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-12 | 241 | 360 | 129 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-33 | 241 | 358 | 140 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-40 | 235 | 359 | 136 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACB12931.1 | 0 | 85 | 358 | 33 | 301 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
| DDBJ | BAF43573.1 | 0 | 82 | 358 | 1 | 274 | pectate lyase [Prunus persica] |
| RefSeq | XP_002297822.1 | 0 | 66 | 358 | 1 | 299 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304700.1 | 0 | 85 | 358 | 33 | 301 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518146.1 | 0 | 65 | 358 | 2 | 300 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 161 | 358 | 2 | 200 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 161 | 358 | 2 | 200 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000002 | 230 | 358 | 50 | 166 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00001 | 239 | 358 | 119 | 256 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.002 | 239 | 358 | 71 | 200 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Transmembrane Domains | ||||
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| Start | End | |||
| 33 | 55 | |||
| 67 | 89 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY294679 | 326 | 22 | 347 | 0 |
| DY292505 | 297 | 49 | 345 | 0 |
| FC909145 | 276 | 49 | 324 | 0 |
| CD574214 | 267 | 49 | 315 | 0 |
| EY702256 | 271 | 88 | 358 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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