Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G199100.1 |
Family | AA3 |
Protein Properties | Length: 575 Molecular Weight: 63203.1 Isoelectric Point: 9.6562 |
Chromosome | Chromosome/Scaffold: 11 Start: 48052142 End: 48060160 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 52 | 573 | 0 |
SFIQEATSAPEVSFYDYIVIGGGTAGCPLAATLSARDAKVLVLERGGSPYTNTTKIRMENVISTLTDDSPNSISQSFISEDRVPGNRARVLGGGTVINLG FYSRAETLFLKEAGIDEALANESYEWVEKKIVYKPGAFQWQTAVRNGLLEVGVLPDNGFTYAHLNGTKTSGTIFDKNGNRHTAADLLEYANPTMIKVYLH AVVHKITFTIKDGQRPKADGVIFYDANGGRHIAYLKHESNNRSEIILSAGAIGSPQLLMLSGIGPTARLRSLGIKVVLDQPMVGREMADKPLNGLIIPYP THIPLSLATVVGINKTSNYFESLNGFDLSALSGSGGAQPQTSNPSQEAMANSTRNQAFLVQTIFGPISKGYLELQNTNASDNPKLRFNYFQAAVDLRRCV SGMQTVINVVNSDSLSRFRFRNMTTQDLINMTVNRAGNLRRRNPNATTSLEQYCIDTVMTFWHYHGGCQIGKVVDKDYKVLGLDQLRVIDASTFSFSPGT NPQAAIMMLGRSMGRRILQSRR |
Full Sequence |
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Protein Sequence Length: 575 Download |
MGLKYSWRFL ALVFMVVIAN FHGLNYAEKG IKFEEKQIVT FSHSDMPAPK YSFIQEATSA 60 PEVSFYDYIV IGGGTAGCPL AATLSARDAK VLVLERGGSP YTNTTKIRME NVISTLTDDS 120 PNSISQSFIS EDRVPGNRAR VLGGGTVINL GFYSRAETLF LKEAGIDEAL ANESYEWVEK 180 KIVYKPGAFQ WQTAVRNGLL EVGVLPDNGF TYAHLNGTKT SGTIFDKNGN RHTAADLLEY 240 ANPTMIKVYL HAVVHKITFT IKDGQRPKAD GVIFYDANGG RHIAYLKHES NNRSEIILSA 300 GAIGSPQLLM LSGIGPTARL RSLGIKVVLD QPMVGREMAD KPLNGLIIPY PTHIPLSLAT 360 VVGINKTSNY FESLNGFDLS ALSGSGGAQP QTSNPSQEAM ANSTRNQAFL VQTIFGPISK 420 GYLELQNTNA SDNPKLRFNY FQAAVDLRRC VSGMQTVINV VNSDSLSRFR FRNMTTQDLI 480 NMTVNRAGNL RRRNPNATTS LEQYCIDTVM TFWHYHGGCQ IGKVVDKDYK VLGLDQLRVI 540 DASTFSFSPG TNPQAAIMML GRSMGRRILQ SRRR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05199 | GMC_oxred_C | 7.0e-24 | 417 | 561 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR01810 | betA | 1.0e-32 | 67 | 569 | 565 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
PRK02106 | PRK02106 | 3.0e-38 | 66 | 569 | 587 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 7.0e-43 | 66 | 574 | 570 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 51 | 572 | 560 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI31862.1 | 0 | 1 | 572 | 1 | 537 | unnamed protein product [Vitis vinifera] |
EMBL | CBI34759.1 | 0 | 48 | 572 | 29 | 571 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267807.1 | 0 | 1 | 572 | 1 | 559 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267848.1 | 0 | 1 | 572 | 1 | 559 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002510860.1 | 0 | 6 | 572 | 5 | 570 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 52 | 572 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 52 | 572 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 52 | 572 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 52 | 572 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 52 | 572 | 13 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |