Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10037523 |
Family | GT4 |
Protein Properties | Length: 1305 Molecular Weight: 142580 Isoelectric Point: 7.4452 |
Chromosome | Chromosome/Scaffold: 196 Start: 353073 End: 360809 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 1084 | 1274 | 5.9e-23 |
NDMLVMSLSSINPGKGQLLLLESAKMLAESDDSLLNLADKHHLRSLLQDQQHRTGGVAQESVIKVLVGSVGSKSNKIPYVKEILGFVSRHSNLSKTVLWT PSTTRVASLYSAADVYVINSQGIGETFGRVTIEAMAFGLPVVGTDAGGTKEIVEQNVTGLLHPVGRQGIRVLAENLRYLMKNREVRKGMGK |
Full Sequence |
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Protein Sequence Length: 1305 Download |
MSKEVGEEVD YDSDPEEEKR LLGMRRREAA SDDEEDDAES EKQQKEKNPM DRRAPVLSDE 60 SDDQGGAADY DYEDEESQLD GGAEEEEEEE EVYDDEDDVV DEEEGVYEDG RGKNTIEKRG 120 IGVGVDGVKG DAIDMEGREL EPGMEDVGEA GDNVEGEEGK KENEPFAVPT AGAFYMHDDR 180 FRESTGGRGG RAFGGRKLWE SKDDKKWGHD KFEELTSHEI HHDQGRRNSR GSFRGRGGKG 240 CGPEQGYGRR NRSGAFSNGN TQNQAPKGVR GRGPRKYEPR WNNNSQGPPP QSKQPVEKMS 300 HDSSRRAATA MPNSESDQLP PARKLSGLNS ASPPFYPSGS SSKDAAQSHK NDLQGGSTSR 360 NVRNSVAEGT FNVKQTGSLG RGKNVSDTVG IDKLYIDEPA TLTSGKGSNN VQMLPAGSSM 420 INSSRASQTR AQGRAGPVPG QVGYLPTAPH NQLNRISPAA QHHVVQQSVI QGRVQSSVQA 480 PNQQLSQHSG GGSRASSPPN SAMSENSYEH EAESTSDSSK SRSALVGKAK GSGTGQFLYG 540 GAQVGPGDQN FPPAFLPVMQ FGGQHPGGIG VPAVGMAFPG YVSQSQHGVG NSEMTWLPVL 600 TGPAGGLGAT YCPPYITVDG SYHSGQPSSM SSSSGGLGLG DGQQAIVMEE SIIRPDLHVN 660 VTRQSPLRPN GRATPRNSPT YKRLNSSRTP RRDGRSSGGG LQWFRSSRIV YWLLLITLWT 720 YLGFYVQSRW AHDNNKEEFL GFGGRNGVVH SEISEATVRR DLLGNETSLA VNNKIEVEDG 780 KGIEVSLAKK ENEASSHHTV VPKKKDKKPV RRLRRRARGR KKAKIEDESN EPEVQELEIP 840 KRNTSYGLLV GPFGTTEDQV LGWSPEKRTG TCDRKGAFAR LVWSRKFVLV FHELSMTGAP 900 LSMLELATEL LSCGATVSVV VLSRKGGLMP ELAKRRIKVL DDRADLSFKT AMKADLVIAG 960 SAVCTSWIDQ YITRFPAGGS QIVWWIMENR REYFDRSKIV LDRVKMVVFL SESQSRQWLT 1020 WCEGESIKLR SPPAVVDLSV NDELAFVAGI PCSLNSPSSS PEEMLEKKQL LRNSVRGEMG 1080 LNDNDMLVMS LSSINPGKGQ LLLLESAKML AESDDSLLNL ADKHHLRSLL QDQQHRTGGV 1140 AQESVIKVLV GSVGSKSNKI PYVKEILGFV SRHSNLSKTV LWTPSTTRVA SLYSAADVYV 1200 INSQGIGETF GRVTIEAMAF GLPVVGTDAG GTKEIVEQNV TGLLHPVGRQ GIRVLAENLR 1260 YLMKNREVRK GMGKKGKEKV ERKYLKNHMY RKFGELLYKC MQIK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd03808 | GT1_cap1E_like | 1.0e-16 | 1098 | 1265 | 169 | + This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. | ||
COG0438 | RfaG | 1.0e-16 | 886 | 1265 | 384 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
cd03811 | GT1_WabH_like | 2.0e-17 | 886 | 1248 | 384 | + This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. | ||
cd03798 | GT1_wlbH_like | 6.0e-18 | 1080 | 1265 | 187 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
cd03801 | GT1_YqgM_like | 1.0e-22 | 1065 | 1298 | 235 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN71826.1 | 0 | 648 | 1304 | 1 | 734 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36173.1 | 0 | 648 | 1304 | 1 | 683 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002284822.1 | 0 | 662 | 1304 | 4 | 691 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298139.1 | 0 | 648 | 1304 | 1 | 681 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528176.1 | 0 | 648 | 1304 | 1 | 686 | glycosyltransferase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3mbo_H | 0.000000002 | 1110 | 1302 | 227 | 407 | A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate |
PDB | 3mbo_G | 0.000000002 | 1110 | 1302 | 227 | 407 | A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate |
PDB | 3mbo_F | 0.000000002 | 1110 | 1302 | 227 | 407 | A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate |
PDB | 3mbo_E | 0.000000002 | 1110 | 1302 | 227 | 407 | A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate |
PDB | 3mbo_D | 0.000000002 | 1110 | 1302 | 227 | 407 | A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG147409 | 264 | 841 | 1104 | 0 |
EY809523 | 244 | 847 | 1090 | 0 |
HS064398 | 246 | 825 | 1070 | 0 |
FD987546 | 240 | 864 | 1103 | 0 |
GW833587 | 232 | 860 | 1091 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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