| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000731047 |
| Family | GH28 |
| Protein Properties | Length: 177 Molecular Weight: 18643.7 Isoelectric Point: 6.9908 |
| Chromosome | Chromosome/Scaffold: 017561135 Start: 11669 End: 12199 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 2 | 166 | 0 |
| ITVSGGGTFDGQGAFAWSQNNCSKSKHCSGFANLRFDFVTNSIIQDVTSLISKNFHVHVYGCNNVTFQHVHITALGDSKNTNGIHIGKSTGINITHTYIG TGDDCVSIGDGNNQIAVTNVSCGPSHGISIGSLGRYDNEESLAGIIVKNCTLTNTQNSVHIKTWP | |||
| Full Sequence |
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| Protein Sequence Length: 177 Download |
| MITVSGGGTF DGQGAFAWSQ NNCSKSKHCS GFANLRFDFV TNSIIQDVTS LISKNFHVHV 60 YGCNNVTFQH VHITALGDSK NTNGIHIGKS TGINITHTYI GTGDDCVSIG DGNNQIAVTN 120 VSCGPSHGIS IGSLGRYDNE ESLAGIIVKN CTLTNTQNSV HIKTWPNSPV ATAVEM* 180 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-29 | 2 | 165 | 164 | + Probable polygalacturonase At3g15720 | ||
| PLN02155 | PLN02155 | 8.0e-32 | 7 | 165 | 161 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-33 | 2 | 165 | 166 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-51 | 2 | 169 | 169 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-60 | 2 | 173 | 173 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAP37458.1 | 0 | 2 | 172 | 123 | 294 | polygalacturonase [Fragaria x ananassa] |
| GenBank | ABE77145.1 | 0 | 2 | 172 | 123 | 294 | putative polygalacturonase [Fragaria x ananassa] |
| GenBank | ABR26683.1 | 0 | 2 | 173 | 123 | 295 | polygalacturonase [Fragaria chiloensis] |
| DDBJ | BAA89476.1 | 0 | 2 | 167 | 115 | 281 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 2 | 167 | 115 | 281 | polygalacturonase [Salix gilgiana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 0.0000000004 | 2 | 164 | 97 | 259 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.0000000004 | 2 | 164 | 97 | 259 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 0.000000005 | 2 | 164 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000005 | 2 | 164 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000005 | 2 | 164 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO513613 | 169 | 2 | 169 | 0 |
| EC987202 | 177 | 1 | 176 | 0 |
| EC944002 | 177 | 1 | 176 | 0 |
| EC941822 | 177 | 1 | 176 | 0 |
| CU617067 | 176 | 2 | 176 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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