| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_033443m |
| Family | GH28 |
| Protein Properties | Length: 251 Molecular Weight: 26925.8 Isoelectric Point: 7.9229 |
| Chromosome | Chromosome/Scaffold: 11102 Start: 24490 End: 25607 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 49 | 251 | 2.8026e-45 |
| KEGCAAAGSGKVVVPKGKYFLGVVDLIGPCKGAMHLQVEGTLVAPAKASQYSKNSWVTLRYLDRLTVFGGGAFDGQGEIAWERAHSPGHSLNVLSSKNLT FHLFSVKALGHSLNTDGIHIGRSEGINIINSNIVIGDDCISIGQGSRQEEPVSGIYVKNCIIYDTDNGVRIKIWPALYGGIASNIHFEDIIMQNVSNPII IDQ | |||
| Full Sequence |
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| Protein Sequence Length: 251 Download |
| MGSKAHVCTL YLLLLFAFTS EARANTFDVT KYGAKAGSDI TKALLSAWKE GCAAAGSGKV 60 VVPKGKYFLG VVDLIGPCKG AMHLQVEGTL VAPAKASQYS KNSWVTLRYL DRLTVFGGGA 120 FDGQGEIAWE RAHSPGHSLN VLSSKNLTFH LFSVKALGHS LNTDGIHIGR SEGINIINSN 180 IVIGDDCISI GQGSRQEEPV SGIYVKNCII YDTDNGVRIK IWPALYGGIA SNIHFEDIIM 240 QNVSNPIIID Q |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-35 | 13 | 251 | 301 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-36 | 27 | 251 | 288 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 5.0e-37 | 10 | 251 | 298 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-43 | 52 | 251 | 254 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-49 | 26 | 251 | 287 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 17 | 251 | 20 | 308 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 17 | 251 | 20 | 308 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002310765.1 | 0 | 1 | 251 | 1 | 306 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329175.1 | 0 | 7 | 251 | 10 | 308 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333303.1 | 0 | 7 | 251 | 10 | 308 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000005 | 115 | 250 | 113 | 311 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.00001 | 57 | 251 | 41 | 264 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.00001 | 57 | 251 | 41 | 264 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.00001 | 57 | 251 | 41 | 264 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.00001 | 57 | 251 | 41 | 264 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Signal Peptide | ||||
|---|---|---|---|---|
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| Cleavage Site | ||||
| 24 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| CU617067 | 303 | 7 | 251 | 0 |
| FC885548 | 277 | 27 | 247 | 0 |
| CO113992 | 293 | 13 | 246 | 0 |
| CO132750 | 299 | 10 | 249 | 0 |
| DY292761 | 276 | 28 | 247 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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