| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_027361m |
| Family | GH28 |
| Protein Properties | Length: 192 Molecular Weight: 20657.4 Isoelectric Point: 8.4981 |
| Chromosome | Chromosome/Scaffold: 12340 Start: 9996 End: 10675 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 8 | 191 | 2.10195e-44 |
| EACSAKGSNRVVVPKGTYSIGLTDLNGPCKGAMELLVQETLLAPINPSEHAKDSWITFAYIDRFKLSGGGTFNGQGQVAWKQNNCGRNPKCKRLSVSLRF DFITNSVVQDVTSLDSKNFHVNVLGGKNLTFDRFTITAPGDSVNTDGIHIVHSNGINIINSNSAIGDDCIFIRGTSEQIRITNV | |||
| Full Sequence |
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| Protein Sequence Length: 192 Download |
| ALLGSWKEAC SAKGSNRVVV PKGTYSIGLT DLNGPCKGAM ELLVQETLLA PINPSEHAKD 60 SWITFAYIDR FKLSGGGTFN GQGQVAWKQN NCGRNPKCKR LSVSLRFDFI TNSVVQDVTS 120 LDSKNFHVNV LGGKNLTFDR FTITAPGDSV NTDGIHIVHS NGINIINSNS AIGDDCIFIR 180 GTSEQIRITN V* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-20 | 1 | 191 | 197 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 1.0e-20 | 1 | 191 | 192 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-24 | 1 | 191 | 199 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-41 | 10 | 191 | 182 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-41 | 1 | 191 | 192 | + polygalacturonase/glycoside hydrolase family protein | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 1 | 191 | 45 | 235 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 1 | 191 | 45 | 235 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 1 | 191 | 45 | 235 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 1 | 191 | 45 | 235 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333303.1 | 0 | 1 | 191 | 45 | 235 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000001 | 60 | 191 | 100 | 240 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| GW619601 | 187 | 5 | 191 | 0 |
| GW618604 | 152 | 2 | 153 | 0 |
| GW617460 | 152 | 2 | 153 | 0 |
| EE255109 | 191 | 1 | 191 | 0 |
| EE259861 | 191 | 1 | 191 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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