| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 111266 |
| Family | GH28 |
| Protein Properties | Length: 411 Molecular Weight: 44683.4 Isoelectric Point: 4.9314 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 388 | 0 |
| RACHTENATMLVPGGKAFVVNYLLLTGPCATNLRLKIDGIVLADTRDMIHWSNITTWISIARVYDFSVEGYGIIDGQGEEWWRISCRRNSSYVSDSSYRL YSFLTFDSSANITIQDLKFVNSPQMHLAIEESSNVSIKGVEILAPHDSPNTDGIHLHMSNNVSIEKCIIGTGDDCISIAKNTSNVVIREIICGPGHGISI GSLGRNKTPEFVSNVKVENSILESTKYGLRIKTWQGGQGFASNFSYYNVVMMNVLQPIIIDQYYCDGNSSFSCGTEELDAVKVSNVSYSNIMGTSASSVA LRFQCSLGNPCYNLVLENVFLNLSNGSTPSAFCLNA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 411 Download |
| MIARGVADLS ELSPALSPEG ASYDPREFNV VEFGARGDGL SDDSQAFLAA WKRACHTENA 60 TMLVPGGKAF VVNYLLLTGP CATNLRLKID GIVLADTRDM IHWSNITTWI SIARVYDFSV 120 EGYGIIDGQG EEWWRISCRR NSSYVSDSSY RLYSFLTFDS SANITIQDLK FVNSPQMHLA 180 IEESSNVSIK GVEILAPHDS PNTDGIHLHM SNNVSIEKCI IGTGDDCISI AKNTSNVVIR 240 EIICGPGHGI SIGSLGRNKT PEFVSNVKVE NSILESTKYG LRIKTWQGGQ GFASNFSYYN 300 VVMMNVLQPI IIDQYYCDGN SSFSCGTEEL DAVKVSNVSY SNIMGTSASS VALRFQCSLG 360 NPCYNLVLEN VFLNLSNGST PSAFCLNAFG QNKGLVVPNS CLNSSLAWQQ * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-84 | 60 | 388 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02155 | PLN02155 | 4.0e-85 | 28 | 403 | 378 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-88 | 28 | 401 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 3.0e-103 | 25 | 398 | 377 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-115 | 9 | 405 | 399 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK23977.1 | 0 | 19 | 398 | 47 | 431 | unknown [Picea sitchensis] |
| GenBank | ABK26513.1 | 0 | 28 | 398 | 45 | 420 | unknown [Picea sitchensis] |
| GenBank | ACN40008.1 | 0 | 19 | 398 | 47 | 431 | unknown [Picea sitchensis] |
| DDBJ | BAF32143.1 | 0 | 28 | 403 | 29 | 399 | pollen allergen [Chamaecyparis obtusa] |
| Swiss-Prot | Q7M1E7 | 0 | 28 | 403 | 59 | 429 | PGLR2_CHAOB RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; AltName: Full=Major pollen allergen Cha o 2; AltName: Allergen=Cha o 2; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-23 | 109 | 316 | 102 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-18 | 17 | 391 | 13 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 3jur_D | 4e-17 | 26 | 311 | 26 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-17 | 26 | 311 | 26 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-17 | 26 | 311 | 26 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX340593 | 286 | 114 | 390 | 0 |
| EX438627 | 273 | 28 | 293 | 0 |
| FS942787 | 304 | 103 | 405 | 0 |
| EX314309 | 276 | 38 | 306 | 0 |
| DV987134 | 267 | 28 | 287 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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