| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 113633 |
| Family | GH28 |
| Protein Properties | Length: 428 Molecular Weight: 45292.5 Isoelectric Point: 7.649 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 59 | 225 | 2e-37 |
| SSSYASMVLVPGGRTFVISPVQLKGPCKSLITLQVAGNLVASTRFLTSDETTRDWIVIRKVSGLTIQGGGVLDGRGKQWWPKSCKFDSTQPCHRAPTSLV LHDSERVLVDGLTLVNSQQIHFSIFHSSNVTATNLIVSAARKSPNTDGVHVQGSKFVNLGTITIDTG | |||
| GH28 | 248 | 413 | 0 |
| GDDCISIGANTSHVSMRDITCGAGHGISIGSLGNYKSAAFVSNISLDGALLANTTNGLRIKTWPASGGVGLATGISFRNVQMDNVKNPIIIDQFYCDMES SPQGCDHGSGVEVRDVVYENISGSSATPVGVKLNCNHPCTEIVMSNIRLIQTRDGSPCTAQCSHVY | |||
| Full Sequence |
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| Protein Sequence Length: 428 Download |
| MIVLVLSIHH AHCTTVETIV SSVVSYGARG DGQTDDTKAL LDAWNAACSG GGASRRYGSS 60 SYASMVLVPG GRTFVISPVQ LKGPCKSLIT LQVAGNLVAS TRFLTSDETT RDWIVIRKVS 120 GLTIQGGGVL DGRGKQWWPK SCKFDSTQPC HRAPTSLVLH DSERVLVDGL TLVNSQQIHF 180 SIFHSSNVTA TNLIVSAARK SPNTDGVHVQ GSKFVNLGTI TIDTGMPASF SFFLSFFPFL 240 TLFALLDGDD CISIGANTSH VSMRDITCGA GHGISIGSLG NYKSAAFVSN ISLDGALLAN 300 TTNGLRIKTW PASGGVGLAT GISFRNVQMD NVKNPIIIDQ FYCDMESSPQ GCDHGSGVEV 360 RDVVYENISG SSATPVGVKL NCNHPCTEIV MSNIRLIQTR DGSPCTAQCS HVYGRAYNAT 420 PPPCLLV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-67 | 26 | 421 | 403 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-80 | 66 | 412 | 349 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-82 | 26 | 424 | 405 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 4.0e-100 | 26 | 424 | 403 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-101 | 26 | 425 | 404 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACJ06506.1 | 0 | 15 | 424 | 70 | 440 | polygalacturonase [Diospyros kaki] |
| EMBL | CAA65072.1 | 0 | 5 | 424 | 53 | 432 | polygalacturonase [Brassica napus] |
| EMBL | CAD21651.2 | 0 | 5 | 424 | 53 | 432 | endo polygalacturonase [Brassica rapa subsp. rapa] |
| RefSeq | NP_191310.1 | 0 | 5 | 424 | 52 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002529616.1 | 0 | 22 | 424 | 109 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-17 | 125 | 396 | 122 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000001 | 122 | 412 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000001 | 122 | 412 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000001 | 122 | 412 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000001 | 122 | 412 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Signal Peptide | ||||
|---|---|---|---|---|
| Cleavage Site | ||||
| 13 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EH769878 | 278 | 66 | 343 | 0 |
| EX340593 | 305 | 118 | 414 | 0 |
| EX314309 | 306 | 31 | 334 | 0 |
| DR050772 | 320 | 89 | 396 | 0 |
| EH769463 | 284 | 27 | 310 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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